RNA–Protein interactions for RNA: ENST00000463440.1

COL1A1-202, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 614 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-202ENST00000463440 ARHGEF16Q5VV41 709 aa18.8■□□□□ 0.6
COL1A1-202ENST00000463440 SCFD2Q8WU76 684 aa18.8■□□□□ 0.6
COL1A1-202ENST00000463440 PIBF1Q8WXW3 757 aa18.8■□□□□ 0.6
COL1A1-202ENST00000463440 VTI1AQ96AJ9 217 aa18.8■□□□□ 0.6
COL1A1-202ENST00000463440 SEC63Q9UGP8 760 aaKnown RBP18.8■□□□□ 0.6
COL1A1-202ENST00000463440 NKRFO15226 690 aaKnown RBP eCLIP18.79■□□□□ 0.6
COL1A1-202ENST00000463440 RXRAP19793 462 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 BMP8BP34820 402 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 HSPA4P34932 840 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 TLE2Q04725 743 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 PPP2R5BQ15173 497 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 STXBP2Q15833 593 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 FANCBQ8NB91 859 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 KCNB2Q92953 911 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 LBHD1Q9BQE6 289 aaPredicted RBP18.79■□□□□ 0.6
COL1A1-202ENST00000463440 DNAH12Q6ZR08 3092 aa18.79■□□□□ 0.6
COL1A1-202ENST00000463440 A0A0U1RQG5 324 aaPredicted RBP18.78■□□□□ 0.6
COL1A1-202ENST00000463440 GCOM1H8Y6P7 765 aaPredicted RBP18.78■□□□□ 0.6
COL1A1-202ENST00000463440 CABYRO75952 493 aa18.78■□□□□ 0.6
COL1A1-202ENST00000463440 PLEKHA8P1O95397 391 aa18.78■□□□□ 0.6
COL1A1-202ENST00000463440 POLR2MP0CAP2 368 aa18.78■□□□□ 0.6
COL1A1-202ENST00000463440 EIF2AK2P19525 551 aaKnown RBP18.78■□□□□ 0.6
COL1A1-202ENST00000463440 MICU3Q86XE3 530 aa18.78■□□□□ 0.6
COL1A1-202ENST00000463440 TCEANC2Q96MN5 208 aa18.78■□□□□ 0.6
COL1A1-202ENST00000463440 PRDM5Q9NQX1 630 aaPredicted RBP18.78■□□□□ 0.6
COL1A1-202ENST00000463440 PXMP2Q9NR77 195 aa18.78■□□□□ 0.6
COL1A1-202ENST00000463440 MROH7Q68CQ1 1323 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 TRIOBPQ9H2D6 2365 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 DCDC2CA8MYV0 355 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 EPB41L2O43491 1005 aaKnown RBP18.77■□□□□ 0.6
COL1A1-202ENST00000463440 PQBP1O60828 265 aaKnown RBP18.77■□□□□ 0.6
COL1A1-202ENST00000463440 PTGS1P23219 599 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 FGD1P98174 961 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 MDM2Q00987 491 aaPredicted RBP18.77■□□□□ 0.6
COL1A1-202ENST00000463440 TTLL4Q14679 1199 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 BRDTQ58F21 947 aaPredicted RBP18.77■□□□□ 0.6
COL1A1-202ENST00000463440 TMEM63BQ5T3F8 832 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 APOA5Q6Q788 366 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 RAB11FIP4Q86YS3 637 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 SRBD1Q8N5C6 995 aaKnown RBP18.77■□□□□ 0.6
COL1A1-202ENST00000463440 TOX2Q96NM4 488 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 UBE2OQ9C0C9 1292 aaKnown RBP18.77■□□□□ 0.6
COL1A1-202ENST00000463440 PDLIM7Q9NR12 457 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 SNX14Q9Y5W7 946 aa18.77■□□□□ 0.6
COL1A1-202ENST00000463440 EIF3JO75822 258 aaKnown RBP18.76■□□□□ 0.59
COL1A1-202ENST00000463440 NR3C2P08235 984 aa18.76■□□□□ 0.59
COL1A1-202ENST00000463440 CLTBP09497 229 aa18.76■□□□□ 0.59
COL1A1-202ENST00000463440 TXNP10599 105 aaKnown RBP18.76■□□□□ 0.59
COL1A1-202ENST00000463440 HOXA13P31271 388 aaPredicted RBP18.76■□□□□ 0.59
COL1A1-202ENST00000463440 CPT1AP50416 773 aa18.76■□□□□ 0.59
COL1A1-202ENST00000463440 CXCL17Q6UXB2 119 aa18.76■□□□□ 0.59
COL1A1-202ENST00000463440 ANKRD33Q7Z3H0 272 aa18.76■□□□□ 0.59
COL1A1-202ENST00000463440 OR6J1Q8NGC5 347 aa18.76■□□□□ 0.59
COL1A1-202ENST00000463440 JAKMIP1Q96N16 626 aaKnown RBP18.76■□□□□ 0.59
COL1A1-202ENST00000463440 RBM28Q9NW13 759 aaKnown RBP18.76■□□□□ 0.59
COL1A1-202ENST00000463440 ARVCFO00192 962 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 ZBTB43O43298 467 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 BLOC1S2Q6QNY1 142 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 SEPT14Q6ZU15 432 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 TMTC3Q6ZXV5 915 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 CMTR1Q8N1G2 835 aaKnown RBP18.75■□□□□ 0.59
COL1A1-202ENST00000463440 PDCD2LQ9BRP1 358 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 POLR3EQ9NVU0 708 aa18.75■□□□□ 0.59
COL1A1-202ENST00000463440 PSMA5P28066 241 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 CDK7P50613 346 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 FXR1P51114 621 aaKnown RBP eCLIP18.74■□□□□ 0.59
COL1A1-202ENST00000463440 RTN1Q16799 776 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 SH3RF1Q7Z6J0 888 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 FCHSD1Q86WN1 690 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 CCDC82Q8N4S0 544 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 CUL5Q93034 780 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 SEZ6LQ9BYH1 1024 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 TMEM39AQ9NV64 488 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 BRPF3Q9ULD4 1205 aa18.74■□□□□ 0.59
COL1A1-202ENST00000463440 KLF18A0A0U1RQI7 1052 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 TRIM43BA6NCK2 446 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 TLR3O15455 904 aaKnown RBP18.73■□□□□ 0.59
COL1A1-202ENST00000463440 ARIH2O95376 493 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 MYCLP12524 364 aaPredicted RBP18.73■□□□□ 0.59
COL1A1-202ENST00000463440 RCAN1P53805 252 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 PGM5Q15124 567 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 CCDC62Q6P9F0 684 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 COPS5Q92905 334 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 TRIM43Q96BQ3 446 aaPredicted RBP18.73■□□□□ 0.59
COL1A1-202ENST00000463440 PCDH10Q9P2E7 1040 aa18.73■□□□□ 0.59
COL1A1-202ENST00000463440 NAP1L2Q9ULW6 460 aaPredicted RBP18.73■□□□□ 0.59
COL1A1-202ENST00000463440 GOLGA8AA7E2F4 631 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 GOLGA8BA8MQT2 603 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 KIAA0355O15063 1070 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 KPNA6O60684 536 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 SLC34A2O95436 690 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 GH1P01241 217 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 CPA1P15085 419 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 RAG1P15918 1043 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 CCND2P30279 289 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 FAAP100Q0VG06 881 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 ITGA7Q13683 1181 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 Q6ZUG5 572 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 VSIG10LQ86VR7 867 aa18.72■□□□□ 0.59
COL1A1-202ENST00000463440 TDHQ8IZJ6 230 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms