RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 RASGRP2Q7LDG7 609 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 OSBP2Q969R2 916 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 OSBPL9Q96SU4 736 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 FUCA2Q9BTY2 467 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 YIPF3Q9GZM5 350 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 TMEM51Q9NW97 253 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 HPCAL4Q9UM19 191 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 TCIRG1Q13488 830 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 DBN1Q16643 649 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 PDCD7Q8N8D1 485 aaKnown RBP17.24■□□□□ 0.35
SMC4-204ENST00000462787 ANGPTL2Q9UKU9 493 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 STK36Q9NRP7 1315 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 CEBPAP49715 358 aaPredicted RBP17.24■□□□□ 0.35
SMC4-204ENST00000462787 CCDC89Q8N998 374 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 FUT8Q9BYC5 575 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 USTQ9Y2C2 406 aa17.24■□□□□ 0.35
SMC4-204ENST00000462787 TEX33O43247 280 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 VTI1AQ96AJ9 217 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 TCHPQ9BT92 498 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 NYXQ9GZU5 481 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 ATP8A2Q9NTI2 1148 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 A1BGP04217 495 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 RFC1P35251 1148 aaPredicted RBP17.23■□□□□ 0.35
SMC4-204ENST00000462787 FAM47AQ5JRC9 791 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 TBX22Q9Y458 520 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 COL4A3BPQ9Y5P4 624 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 PBRM1Q86U86 1689 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 MAPK13O15264 365 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 HIBADHP31937 336 aaKnown RBP17.23■□□□□ 0.35
SMC4-204ENST00000462787 DR1Q01658 176 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.23■□□□□ 0.351e-8■■■■■ 268.2
SMC4-204ENST00000462787 ATP2A3Q93084 1043 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 COMMD10Q9Y6G5 202 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 BIRC2Q13490 618 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 LARP4BQ92615 738 aaKnown RBP17.23■□□□□ 0.35
SMC4-204ENST00000462787 CENPKQ9BS16 269 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 HDAC6Q9UBN7 1215 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 STK17AQ9UEE5 414 aa17.23■□□□□ 0.35
SMC4-204ENST00000462787 DIS3Q9Y2L1 958 aaKnown RBP17.23■□□□□ 0.35
SMC4-204ENST00000462787 PRPF3O43395 683 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 CREB3O43889 395 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 HNRNPH1P31943 449 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 MTF1Q14872 753 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 BEND6Q5SZJ8 279 aaPredicted RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 NUGGCQ68CJ6 796 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 CHMP6Q96FZ7 201 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 BIN2Q9UBW5 565 aaPredicted RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 PCDHA4Q9UN74 947 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 IRAK1P51617 712 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 LMNB2Q03252 620 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 CCNI2Q6ZMN8 369 aaPredicted RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 ZNF473Q8WTR7 871 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 A0A1B0GTH6 734 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 USP17L12C9JPN9 530 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 USP17L21D6R901 530 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 ECEL1O95672 775 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 ATP1A1P05023 1023 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 MDH1P40925 334 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 VPS41P49754 854 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 PTPN12Q05209 780 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 TEX2Q8IWB9 1127 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 GSDMBQ8TAX9 411 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.22■□□□□ 0.356e-8■■■■□ 23.9
SMC4-204ENST00000462787 ATG3Q9NT62 314 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 A0A1W2PQC6 194 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 ADD2P35612 726 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 MAGOHP61326 146 aaKnown RBP17.22■□□□□ 0.35
SMC4-204ENST00000462787 PROSER3Q2NL68 480 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 DCUN1D2Q6PH85 259 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 PPP4R1Q8TF05 950 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 SETDB2Q96T68 719 aa17.22■□□□□ 0.35
SMC4-204ENST00000462787 DCTN3O75935 186 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 BRD2P25440 801 aaKnown RBP17.21■□□□□ 0.35
SMC4-204ENST00000462787 YEATS2Q9ULM3 1422 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 MRPS25P82663 173 aaKnown RBP17.21■□□□□ 0.35
SMC4-204ENST00000462787 LRRC63Q05C16 580 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 AFAP1L2Q8N4X5 818 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 STOML1Q9UBI4 398 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 PNMA1Q8ND90 353 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 IRX2Q9BZI1 471 aaPredicted RBP17.21■□□□□ 0.35
SMC4-204ENST00000462787 SAP30BPQ9UHR5 308 aaKnown RBP17.21■□□□□ 0.35
SMC4-204ENST00000462787 PCDHA12Q9UN75 941 aa17.21■□□□□ 0.35
SMC4-204ENST00000462787 USP42Q9H9J4 1324 aaKnown RBP17.21■□□□□ 0.34
SMC4-204ENST00000462787 GMNNO75496 209 aa17.21■□□□□ 0.34
SMC4-204ENST00000462787 GCFC2P16383 781 aaKnown RBP17.21■□□□□ 0.34
SMC4-204ENST00000462787 SLCO1A2P46721 670 aa17.21■□□□□ 0.34
SMC4-204ENST00000462787 PSMD2Q13200 908 aa17.21■□□□□ 0.34
SMC4-204ENST00000462787 SMC1BQ8NDV3 1235 aa17.21■□□□□ 0.34
SMC4-204ENST00000462787 TAF1DQ9H5J8 278 aaPredicted RBP17.21■□□□□ 0.34
SMC4-204ENST00000462787 PDE1CQ14123 709 aaPredicted RBP17.2■□□□□ 0.34
SMC4-204ENST00000462787 SHC4Q6S5L8 630 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 TRIM42Q8IWZ5 723 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 FAM133AQ8N9E0 248 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 SPATA4Q8NEY3 305 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 CCT8L2Q96SF2 557 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 RAB20Q9NX57 234 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 TUBE1Q9UJT0 475 aa17.2■□□□□ 0.34
SMC4-204ENST00000462787 AFPP02771 609 aaKnown RBP17.2■□□□□ 0.34
SMC4-204ENST00000462787 RBM43Q6ZSC3 357 aaKnown RBP17.2■□□□□ 0.34
SMC4-204ENST00000462787 MIER3Q7Z3K6 550 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms