RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 EEPD1Q7L9B9 569 aa26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 FBXO16Q8IX29 292 aaPredicted RBP26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 MORC4Q8TE76 937 aa26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 PSTPIP2Q9H939 334 aa26.3■■□□□ 1.8
CCDC28B-203ENST00000461819 KIAA1217Q5T5P2 1943 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 STXBP3O00186 592 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 CDKL5O76039 1030 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 EIF2AK2P19525 551 aaKnown RBP26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 LHX8Q68G74 356 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 CRISPLD2Q9H0B8 497 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 VTA1Q9NP79 307 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 PXMP2Q9NR77 195 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 BARHL2Q9NY43 387 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 FAM184BQ9ULE4 1060 aa26.29■■□□□ 1.8
CCDC28B-203ENST00000461819 LARGE1O95461 756 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 RARBP10826 455 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 CAPN2P17655 700 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 ME3Q16798 604 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 CCDC144BQ3MJ40 725 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 IWS1Q96ST2 819 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 KATNBL1Q9H079 304 aa26.28■■□□□ 1.8
CCDC28B-203ENST00000461819 PIK3CDO00329 1044 aa26.27■■□□□ 1.8
CCDC28B-203ENST00000461819 EDNRBP24530 442 aa26.27■■□□□ 1.8
CCDC28B-203ENST00000461819 USP17L6PQ6QN14 398 aa26.27■■□□□ 1.8
CCDC28B-203ENST00000461819 NECAB1Q8N987 351 aa26.27■■□□□ 1.8
CCDC28B-203ENST00000461819 OGDHLQ9ULD0 1010 aa26.27■■□□□ 1.8
CCDC28B-203ENST00000461819 LIMCH1Q9UPQ0 1083 aa26.27■■□□□ 1.8
CCDC28B-203ENST00000461819 ST18O60284 1047 aa26.26■■□□□ 1.79
CCDC28B-203ENST00000461819 ADCY7P51828 1080 aa26.26■■□□□ 1.79
CCDC28B-203ENST00000461819 PKN1Q16512 942 aa26.26■■□□□ 1.79
CCDC28B-203ENST00000461819 TYW1BQ6NUM6 668 aa26.26■■□□□ 1.79
CCDC28B-203ENST00000461819 CCDC12Q8WUD4 166 aaPredicted RBP26.26■■□□□ 1.79
CCDC28B-203ENST00000461819 GTF3C6Q969F1 213 aa26.26■■□□□ 1.79
CCDC28B-203ENST00000461819 MEIS2O14770 477 aa26.25■■□□□ 1.79
CCDC28B-203ENST00000461819 UBE2SQ16763 222 aa26.25■■□□□ 1.79
CCDC28B-203ENST00000461819 LENG1Q96BZ8 264 aaPredicted RBP26.25■■□□□ 1.79
CCDC28B-203ENST00000461819 RIC8AQ9NPQ8 531 aa26.25■■□□□ 1.79
CCDC28B-203ENST00000461819 SMCO2A6NFE2 343 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 FARP2O94887 1054 aaPredicted RBP26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 DEXIO95424 95 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 MYCNP04198 464 aaPredicted RBP26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 MYCLP12524 364 aaPredicted RBP26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 ADCYAP1R1P41586 468 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 STXBP2Q15833 593 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 ANKLE1Q8NAG6 615 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 PDCD2LQ9BRP1 358 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 XPNPEP3Q9NQH7 507 aa26.24■■□□□ 1.79
CCDC28B-203ENST00000461819 NR3C2P08235 984 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 TNFAIP2Q03169 654 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 PGM5Q15124 567 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 TAPT1Q6NXT6 567 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 CCDC148Q8NFR7 591 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 GLT8D2Q9H1C3 349 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 PDGFCQ9NRA1 345 aa26.23■■□□□ 1.79
CCDC28B-203ENST00000461819 STK36Q9NRP7 1315 aa26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 SPDYE3A6NKU9 549 aa26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 CCND2P30279 289 aa26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 ARRDC4Q8NCT1 418 aa26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 IL27Q8NEV9 243 aa26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 ZSCAN31Q96LW9 406 aaPredicted RBP26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 VPS54Q9P1Q0 977 aa26.22■■□□□ 1.79
CCDC28B-203ENST00000461819 FRMPD4Q14CM0 1322 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 ADCY6O43306 1168 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 DUSP11O75319 330 aaKnown RBP26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 RGS19P49795 217 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 IQSEC1Q6DN90 963 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 TEX2Q8IWB9 1127 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 IL31RAQ8NI17 732 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 EHMT1Q9H9B1 1298 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 C6orf50Q9HD87 102 aa26.21■■□□□ 1.79
CCDC28B-203ENST00000461819 SYNRGQ9UMZ2 1314 aa26.2■■□□□ 1.79
CCDC28B-203ENST00000461819 ESYT2A0FGR8 921 aa26.2■■□□□ 1.78
CCDC28B-203ENST00000461819 EIF3JO75822 258 aaKnown RBP26.2■■□□□ 1.78
CCDC28B-203ENST00000461819 PGK1P00558 417 aa26.2■■□□□ 1.78
CCDC28B-203ENST00000461819 SCFD2Q8WU76 684 aa26.2■■□□□ 1.78
CCDC28B-203ENST00000461819 WDR11Q9BZH6 1224 aa26.2■■□□□ 1.78
CCDC28B-203ENST00000461819 SH2B1Q9NRF2 756 aaPredicted RBP26.2■■□□□ 1.78
CCDC28B-203ENST00000461819 KBTBD13C9JR72 458 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 CTDNEP1O95476 244 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 GNA11P29992 359 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 GJC2Q5T442 439 aaPredicted RBP26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 SEPT14Q6ZU15 432 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 RNF180Q86T96 592 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 CCDC83Q8IWF9 413 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 DIS3LQ8TF46 1054 aaKnown RBP26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 ZMYND12Q9H0C1 365 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 SPC25Q9HBM1 224 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 SH3GLB2Q9NR46 395 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 ORC3Q9UBD5 711 aaPredicted RBP26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 PCDHA6Q9UN73 950 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 PCDHA8Q9Y5H6 950 aa26.19■■□□□ 1.78
CCDC28B-203ENST00000461819 RBM47A0AV96 593 aaKnown RBP26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 DNM1LO00429 736 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 DTNBO60941 627 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 SMPD1P17405 629 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 LRRC41Q15345 812 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 NECAB2Q7Z6G3 386 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 TLK2Q86UE8 772 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 VSIG10LQ86VR7 867 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms