RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 COPS5Q92905 334 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 SCLYQ96I15 445 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 MPHOSPH6Q99547 160 aaKnown RBP17.22■□□□□ 0.35
SMPD4-216ENST00000461187 MTG1Q9BT17 334 aaPredicted RBP17.22■□□□□ 0.35
SMPD4-216ENST00000461187 MTIF3Q9H2K0 278 aaKnown RBP17.22■□□□□ 0.35
SMPD4-216ENST00000461187 TRMT13Q9NUP7 481 aaKnown RBP17.22■□□□□ 0.35
SMPD4-216ENST00000461187 TCF20Q9UGU0 1960 aaKnown RBP17.22■□□□□ 0.35
SMPD4-216ENST00000461187 TNKSO95271 1327 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 KAT6AQ92794 2004 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 PRRC2BQ5JSZ5 2229 aaKnown RBP17.21■□□□□ 0.35
SMPD4-216ENST00000461187 HIP1O00291 1037 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 RAB30Q15771 203 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 CDC37Q16543 378 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-216ENST00000461187 RPUSD2Q8IZ73 545 aaKnown RBP17.21■□□□□ 0.35
SMPD4-216ENST00000461187 ADGRF4Q8IZF3 695 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 ENAHQ8N8S7 591 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-216ENST00000461187 TBC1D5Q92609 795 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 ZSCAN10Q96SZ4 725 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-216ENST00000461187 DSCC1Q9BVC3 393 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 KAT14Q9H8E8 782 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 ZSWIM5Q9P217 1185 aa17.21■□□□□ 0.35
SMPD4-216ENST00000461187 A6NJR5 290 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 B4DLN1 442 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 ARIH2O95376 493 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 SUPT20HL2P0C7V6 817 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 TXNP10599 105 aaKnown RBP17.2■□□□□ 0.34
SMPD4-216ENST00000461187 CYP2C9P11712 490 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 MRPL12P52815 198 aaKnown RBP17.2■□□□□ 0.34
SMPD4-216ENST00000461187 NBPF20Q3BBV1 942 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 YTHDC1Q96MU7 727 aaKnown RBP17.2■□□□□ 0.34
SMPD4-216ENST00000461187 MAF1Q9H063 256 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 PRDM12Q9H4Q4 367 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 GPHNQ9NQX3 736 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-216ENST00000461187 MSRAQ9UJ68 235 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 ABCB11O95342 1321 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 RAD50Q92878 1312 aa17.2■□□□□ 0.34
SMPD4-216ENST00000461187 KPNA6O60684 536 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 TTLL4Q14679 1199 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 ASPRV1Q53RT3 343 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 BRDTQ58F21 947 aaPredicted RBP17.19■□□□□ 0.34
SMPD4-216ENST00000461187 NFRKBQ6P4R8 1299 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 PPP1R13LQ8WUF5 828 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 TAAR1Q96RJ0 339 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 GAS2L1Q99501 681 aaPredicted RBP17.19■□□□□ 0.34
SMPD4-216ENST00000461187 NKX2-4Q9H2Z4 354 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 COL20A1Q9P218 1284 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 YBX2Q9Y2T7 364 aaKnown RBP17.19■□□□□ 0.34
SMPD4-216ENST00000461187 MUC3AQ02505 3323 aa17.19■□□□□ 0.34
SMPD4-216ENST00000461187 IMMTQ16891 758 aaKnown RBP17.18■□□□□ 0.34
SMPD4-216ENST00000461187 QRICH1Q2TAL8 776 aa17.18■□□□□ 0.34
SMPD4-216ENST00000461187 FAM47CQ5HY64 1035 aa17.18■□□□□ 0.34
SMPD4-216ENST00000461187 CCDC62Q6P9F0 684 aa17.18■□□□□ 0.34
SMPD4-216ENST00000461187 SYTL5Q8TDW5 730 aaPredicted RBP17.18■□□□□ 0.34
SMPD4-216ENST00000461187 IL25Q9H293 177 aa17.18■□□□□ 0.34
SMPD4-216ENST00000461187 PFKMP08237 780 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 PARP1P09874 1014 aaKnown RBP17.17■□□□□ 0.34
SMPD4-216ENST00000461187 RABGGTBP53611 331 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 ADGRE1Q14246 886 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 NSUN6Q8TEA1 469 aaKnown RBP17.17■□□□□ 0.34
SMPD4-216ENST00000461187 KRT23Q9C075 422 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 JMJD4Q9H9V9 463 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 SLC28A3Q9HAS3 691 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 CTNNA3Q9UI47 895 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 SLC4A7Q9Y6M7 1214 aa17.17■□□□□ 0.34
SMPD4-216ENST00000461187 PTPN11Q06124 597 aaPredicted RBP17.16■□□□□ 0.34
SMPD4-216ENST00000461187 DEFB128Q7Z7B8 93 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 FBXO11Q86XK2 927 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 MCF2L2Q86YR7 1114 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 STAG2Q8N3U4 1231 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 IWS1Q96ST2 819 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 RMDN3Q96TC7 470 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 CNNM2Q9H8M5 875 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 VAT1LQ9HCJ6 419 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 PRDM6Q9NQX0 595 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 MRPL11Q9Y3B7 192 aaKnown RBP17.16■□□□□ 0.34
SMPD4-216ENST00000461187 MICAL3Q7RTP6 2002 aa17.16■□□□□ 0.34
SMPD4-216ENST00000461187 ZBBXA8MT70 800 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 PITPNM1O00562 1244 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 DHX16O60231 1041 aaKnown RBP17.15■□□□□ 0.34
SMPD4-216ENST00000461187 MYOGP15173 224 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 ARHGAP1Q07960 439 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 SEC23AQ15436 765 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 LY6KQ17RY6 165 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 SEPT14Q6ZU15 432 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 AFG1LQ8WV93 481 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 UBAC1Q9BSL1 405 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 PCDHA11Q9Y5I1 949 aa17.15■□□□□ 0.34
SMPD4-216ENST00000461187 BRWD1Q9NSI6 2320 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 OPLAHO14841 1288 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 GH1P01241 217 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 MMP3P08254 477 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 IQCF3P0C7M6 154 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 ATP2A2P16615 1042 aaKnown RBP17.14■□□□□ 0.33
SMPD4-216ENST00000461187 PDE4AP27815 886 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 RFC2P35250 354 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 STXBP2Q15833 593 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 IFIT1BQ5T764 474 aaKnown RBP17.14■□□□□ 0.33
SMPD4-216ENST00000461187 CYB5R4Q7L1T6 521 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 PPM1EQ8WY54 764 aa17.14■□□□□ 0.33
SMPD4-216ENST00000461187 SYMPKQ92797 1274 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms