RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 ZNF174Q15697 407 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 IFNLR1Q8IU57 520 aaPredicted RBP11.76□□□□□ -0.53
USP39-210ENST00000459775 REXO1Q8N1G1 1221 aaKnown RBP11.76□□□□□ -0.53
USP39-210ENST00000459775 CUL5Q93034 780 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 TRERF1Q96PN7 1200 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 RLFQ13129 1914 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 RIOK3O14730 519 aaKnown RBP11.75□□□□□ -0.53
USP39-210ENST00000459775 SF3A1Q15459 793 aaKnown RBP11.75□□□□□ -0.53
USP39-210ENST00000459775 BRAPQ7Z569 592 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 CCDC12Q8WUD4 166 aaPredicted RBP11.75□□□□□ -0.53
USP39-210ENST00000459775 COL20A1Q9P218 1284 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 CCDC194A0A1B0GVG4 234 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 ESYT2A0FGR8 921 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 UNCXA6NJT0 531 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 ZBTB48P10074 688 aaPredicted RBP11.75□□□□□ -0.53
USP39-210ENST00000459775 MARCKSP29966 332 aaPredicted RBP11.75□□□□□ -0.53
USP39-210ENST00000459775 GNA11P29992 359 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 LONRF3Q496Y0 759 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 LBX2Q6XYB7 198 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 CLEC17AQ6ZS10 378 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 DAGLBQ8NCG7 672 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 TBCKQ8TEA7 893 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 GBP4Q96PP9 640 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 BRMS1Q9HCU9 246 aa11.75□□□□□ -0.53
USP39-210ENST00000459775 MCM7P33993 719 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 STAT3P40763 770 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 CLK2P49760 499 aaKnown RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 MRPL12P52815 198 aaKnown RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 KRT85P78386 507 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 ANO1Q5XXA6 986 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 NSMFQ6X4W1 530 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 ANKRD13CQ8N6S4 541 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 ZNF296Q8WUU4 475 aaPredicted RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 LEO1Q8WVC0 666 aaPredicted RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 GJA10Q969M2 543 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 RNF146Q9NTX7 359 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 LMBRD1Q9NUN5 540 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 ATP6V1DQ9Y5K8 247 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 RBBP6Q7Z6E9 1792 aaKnown RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 ANKRD62A6NC57 917 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 HMGB1P1B2RPK0 211 aaPredicted RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 hCG_1984214I3L0E3 225 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 ALDH1A1P00352 501 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 TM4SF4P48230 202 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 LETM2Q2VYF4 491 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 HABP4Q5JVS0 413 aaKnown RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 SLC30A10Q6XR72 485 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 ZNF713Q8N859 430 aaPredicted RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 YY1AP1Q9H869 796 aa11.74□□□□□ -0.53
USP39-210ENST00000459775 MRPL11Q9Y3B7 192 aaKnown RBP11.74□□□□□ -0.53
USP39-210ENST00000459775 PDE4DIPQ5VU43 2346 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 LOC285556D6RIA3 1793 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 GPR25O00155 361 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 FKTNO75072 461 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 PPFIA4O75335 1185 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 GRIN1Q05586 938 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 IRF5Q13568 498 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 TAF3Q5VWG9 929 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 PPP1R18Q6NYC8 613 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 SMCR8Q8TEV9 937 aaPredicted RBP11.73□□□□□ -0.53
USP39-210ENST00000459775 MOV10L1Q9BXT6 1211 aaKnown RBP11.73□□□□□ -0.53
USP39-210ENST00000459775 TEX13BQ9BXU2 312 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 SPATC1LQ9H0A9 340 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 PDCL3Q9H2J4 239 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 PARP14Q460N5 1801 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 ABCB11O95342 1321 aa11.73□□□□□ -0.53
USP39-210ENST00000459775 TDP2O95551 362 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 OSBPP22059 807 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 BAATQ14032 418 aaPredicted RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 NONOQ15233 471 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP39-210ENST00000459775 PTPAQ15257 358 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 SPECC1Q5M775 1068 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 TTC38Q5R3I4 469 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 GALNT17Q6IS24 598 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 NCAPG2Q86XI2 1143 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 LINC00301Q8NCQ3 95 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 CYP2W1Q8TAV3 490 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 CLIC6Q96NY7 704 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 ANO3Q9BYT9 981 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 PORCNQ9H237 461 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 TMEM60Q9H2L4 133 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 SLC24A3Q9HC58 644 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 RTEL1Q9NZ71 1219 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 FEZ2Q9UHY8 353 aaPredicted RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 COL11A1P12107 1806 aaPredicted RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 GCOM1H8Y6P7 765 aaPredicted RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 TNRC18O15417 2968 aaPredicted RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 POLR2MP0CAP2 368 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 RPS6P62753 249 aaKnown RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 STK38Q15208 465 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 WDR78Q5VTH9 848 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 KRT25Q7Z3Z0 450 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 ANKRD23Q86SG2 305 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 IL31RAQ8NI17 732 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 ZNF396Q96N95 335 aaPredicted RBP11.72□□□□□ -0.53
USP39-210ENST00000459775 TAAR1Q96RJ0 339 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 EFCC1Q9HA90 598 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 CPA4Q9UI42 421 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 TCHHQ07283 1943 aa11.72□□□□□ -0.53
USP39-210ENST00000459775 SLC37A4O43826 429 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 229.9 ms