RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 SLC1A4P43007 532 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 CTSWP56202 376 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 SNCBQ16143 134 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 HLFQ16534 295 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 TMTC3Q6ZXV5 915 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 RRAGAQ7L523 313 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 PROCA1Q8NCQ7 364 aaPredicted RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 DDX17Q92841 729 aaKnown RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 TACO1Q9BSH4 297 aaKnown RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 MMRN2Q9H8L6 949 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 TIAM2Q8IVF5 1701 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 FAM205AQ6ZU69 1335 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 CNTNAP5Q8WYK1 1306 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 GOLGA6L7A0A1B0GV03 622 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 HMGB1P1B2RPK0 211 aaPredicted RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 NMT2O60551 498 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 HNRNPH3P31942 346 aaKnown RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 EVX2Q03828 476 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 TRIM28Q13263 835 aaKnown RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 PPP2R5BQ15173 497 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 CCDC178Q5BJE1 867 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 FIGNQ5HY92 759 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 ZSCAN29Q8IWY8 852 aaPredicted RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 DHTKD1Q96HY7 919 aaPredicted RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 MTA3Q9BTC8 594 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 TMEM60Q9H2L4 133 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 KBTBD4Q9NVX7 518 aa11.41□□□□□ -0.58
CLIP4-208ENST00000456385 TPX2Q9ULW0 747 aaKnown RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 IQSEC3Q9UPP2 1182 aaPredicted RBP11.41□□□□□ -0.58
CLIP4-208ENST00000456385 GMNCA6NCL1 334 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 LCA5LO95447 670 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 GNAT2P19087 354 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 CCNE1P24864 410 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 PDE4DQ08499 809 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 PUM3Q15397 648 aaKnown RBP11.4□□□□□ -0.58
CLIP4-208ENST00000456385 ANKRD20A8PQ5CZ79 823 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 TOM1L2Q6ZVM7 507 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 MREGQ8N565 214 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 FAXDC2Q96IV6 333 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 NOX5Q96PH1 765 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 TMBIM4Q9HC24 238 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 SIK3Q9Y2K2 1263 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 LEMD3Q9Y2U8 911 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 PNPLA7Q6ZV29 1317 aa11.4□□□□□ -0.58
CLIP4-208ENST00000456385 RAD51CO43502 376 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 PALMO75781 387 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 SCG2P13521 617 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 GCFC2P16383 781 aaKnown RBP11.4□□□□□ -0.59
CLIP4-208ENST00000456385 FGFR2P21802 821 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 UBA7P41226 1012 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 TRAPPC10P48553 1259 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 BCAMP50895 628 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 PPP2R5AQ15172 486 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 ARL6IP4Q66PJ3 421 aaKnown RBP11.4□□□□□ -0.59
CLIP4-208ENST00000456385 PPP4R3AQ6IN85 833 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 CHADLQ6NUI6 762 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 DTHD1Q6ZMT9 781 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 KLHL7Q8IXQ5 586 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 CCDC155Q8N6L0 562 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 NOC3LQ8WTT2 800 aaKnown RBP11.4□□□□□ -0.59
CLIP4-208ENST00000456385 SGSM3Q96HU1 749 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 RBM28Q9NW13 759 aaKnown RBP11.4□□□□□ -0.59
CLIP4-208ENST00000456385 BCCIPQ9P287 314 aaKnown RBP eCLIP11.4□□□□□ -0.59
CLIP4-208ENST00000456385 GGA2Q9UJY4 613 aa11.4□□□□□ -0.59
CLIP4-208ENST00000456385 DCDC2CA8MYV0 355 aa11.39□□□□□ -0.59
CLIP4-208ENST00000456385 IRS4O14654 1257 aaPredicted RBP11.39□□□□□ -0.59
CLIP4-208ENST00000456385 TRAPPC3O43617 180 aa11.39□□□□□ -0.59
CLIP4-208ENST00000456385 RPSAP08865 295 aaKnown RBP11.39□□□□□ -0.59
CLIP4-208ENST00000456385 BYSLQ13895 437 aaKnown RBP11.39□□□□□ -0.59
CLIP4-208ENST00000456385 CDC37Q16543 378 aaPredicted RBP11.39□□□□□ -0.59
CLIP4-208ENST00000456385 GPKOWQ92917 476 aaPredicted RBP eCLIP11.39□□□□□ -0.59
CLIP4-208ENST00000456385 SEC16BQ96JE7 1060 aa11.39□□□□□ -0.59
CLIP4-208ENST00000456385 LRP2BPQ9P2M1 347 aa11.39□□□□□ -0.59
CLIP4-208ENST00000456385 CNOT8Q9UFF9 292 aaKnown RBP11.39□□□□□ -0.59
CLIP4-208ENST00000456385 SLC12A6Q9UHW9 1150 aa11.39□□□□□ -0.59
CLIP4-208ENST00000456385 PJA2O43164 708 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 PPP1R12BO60237 982 aaPredicted RBP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 NEBLO76041 1014 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 HSD17B3P37058 310 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 SCTRP47872 440 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 EHHADHQ08426 723 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 SF3A3Q12874 501 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 DRP2Q13474 957 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 HLTFQ14527 1009 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 UAP1Q16222 522 aaPredicted RBP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 ASTE1Q2TB18 679 aaPredicted RBP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 KIF6Q6ZMV9 814 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 NLRP10Q86W26 655 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 DDX42Q86XP3 938 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 ZNF622Q969S3 477 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 NDST4Q9H3R1 872 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 SEMA6BQ9H3T3 888 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 MYH2Q9UKX2 1941 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 GOLGA6L10A6NI86 522 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 PHF20L1A8MW92 1017 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 H0YGN5 161 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 GCOM1H8Y6P7 765 aaPredicted RBP11.38□□□□□ -0.59
CLIP4-208ENST00000456385 MYZAPP0CAP1 466 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 PLCG1P19174 1290 aa11.38□□□□□ -0.59
CLIP4-208ENST00000456385 CYP7A1P22680 504 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms