RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 CCPG1Q9ULG6 757 aa10.08□□□□□ -0.8
COL28A1-205ENST00000453441 NAP1L2Q9ULW6 460 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-205ENST00000453441 PFASO15067 1338 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 ZNF536O15090 1300 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 CPLX1O14810 134 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 PFKFB2O60825 505 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 RGS20O76081 388 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 IFNAR1P17181 557 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 ERCC3P19447 782 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 RGS2P41220 211 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 GCGRP47871 477 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 AKAP17AQ02040 695 aaKnown RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 GRB14Q14449 540 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 KCTD2Q14681 263 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 QRICH1Q2TAL8 776 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 Q3C1V9 767 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 CCDC174Q6PII3 467 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 FBXO11Q86XK2 927 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 MCF2L2Q86YR7 1114 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 TRIM22Q8IYM9 498 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 TRIM47Q96LD4 638 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 RNF26Q9BY78 433 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 PORCNQ9H237 461 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 SLKQ9H2G2 1235 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 RAVER2Q9HCJ3 691 aaKnown RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 SH2B1Q9NRF2 756 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 RNF146Q9NTX7 359 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 SRRDQ9UH36 339 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 LIMCH1Q9UPQ0 1083 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 MRPL11Q9Y3B7 192 aaKnown RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 TRIM17Q9Y577 477 aa10.07□□□□□ -0.8
COL28A1-205ENST00000453441 BAZ2BQ9UIF8 2168 aaKnown RBP10.07□□□□□ -0.8
COL28A1-205ENST00000453441 PLXNB2O15031 1838 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 LOC102724159A0A0B4J2E5 919 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 CYTH3O43739 400 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 PLEKHA8P1O95397 391 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 HOXC6P09630 235 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 XRCC5P13010 732 aaKnown RBP10.06□□□□□ -0.8
COL28A1-205ENST00000453441 RXRAP19793 462 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 COPS2P61201 443 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 PWP2Q15269 919 aaKnown RBP10.06□□□□□ -0.8
COL28A1-205ENST00000453441 AMHR2Q16671 573 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 MORN1Q5T089 497 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 WDR78Q5VTH9 848 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 PPP1R18Q6NYC8 613 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 OTOP1Q7RTM1 612 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 CCDC144CPQ8IYA2 1237 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 SRBD1Q8N5C6 995 aaKnown RBP10.06□□□□□ -0.8
COL28A1-205ENST00000453441 TRERF1Q96PN7 1200 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 MMP19Q99542 508 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 TMUB1Q9BVT8 246 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 GLT8D2Q9H1C3 349 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 VAT1LQ9HCJ6 419 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 TPCN1Q9ULQ1 816 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 DIS3Q9Y2L1 958 aaKnown RBP10.06□□□□□ -0.8
COL28A1-205ENST00000453441 CNTNAP5Q8WYK1 1306 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 DOCK3Q8IZD9 2030 aa10.06□□□□□ -0.8
COL28A1-205ENST00000453441 PRPF3O43395 683 aaKnown RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 ALAS1P13196 640 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 CD46P15529 392 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 GHRHRQ02643 423 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 FUT2Q10981 343 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 FBXO46Q6PJ61 603 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 BLOC1S3Q6QNY0 202 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 HOMER1Q86YM7 354 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 ANKRD35Q8N283 1001 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 MSL3Q8N5Y2 521 aaKnown RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 CCDC12Q8WUD4 166 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 WASF1Q92558 559 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 ZNF516Q92618 1163 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 GTF3C6Q969F1 213 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 DDX11Q96FC9 970 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 AGBL1Q96MI9 1066 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 PIGSQ96S52 555 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 MPHOSPH6Q99547 160 aaKnown RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 APBA2Q99767 749 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 FAM217BQ9NTX9 383 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 PTPN22Q9Y2R2 807 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 PCDHA1Q9Y5I3 950 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 RBBP6Q7Z6E9 1792 aaKnown RBP10.05□□□□□ -0.8
COL28A1-205ENST00000453441 STK36Q9NRP7 1315 aa10.05□□□□□ -0.8
COL28A1-205ENST00000453441 ZNFX1Q9P2E3 1918 aaKnown RBP10.04□□□□□ -0.8
COL28A1-205ENST00000453441 B4DLN1 442 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 NR1I2O75469 434 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 DEXIO95424 95 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 ADORA2AP29274 412 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 CTGFP29279 349 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 CDC27P30260 824 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 ADD1P35611 737 aaKnown RBP10.04□□□□□ -0.8
COL28A1-205ENST00000453441 FLT3LGP49771 235 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 MRPL12P52815 198 aaKnown RBP10.04□□□□□ -0.8
COL28A1-205ENST00000453441 NTRK3Q16288 839 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 NBPF11Q86T75 865 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 RAB11FIP4Q86YS3 637 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 RAET1EQ8TD07 263 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 USP6NLQ92738 828 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 LLPHQ9BRT6 129 aaKnown RBP10.04□□□□□ -0.8
COL28A1-205ENST00000453441 ARHGAP39Q9C0H5 1083 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 CPVLQ9H3G5 476 aa10.04□□□□□ -0.8
COL28A1-205ENST00000453441 ADD3Q9UEY8 706 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms