RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 POLR3EQ9NVU0 708 aa16.66■□□□□ 0.26
TNF-208ENST00000449264 MAP3K20Q9NYL2 800 aaKnown RBP16.66■□□□□ 0.26
TNF-208ENST00000449264 EIF2AK2P19525 551 aaKnown RBP16.65■□□□□ 0.26
TNF-208ENST00000449264 SREBF1P36956 1147 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 ARHGAP4P98171 946 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 KCTD2Q14681 263 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 TPRNQ4KMQ1 711 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 TAAR1Q96RJ0 339 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 SCAND2PQ9GZW5 306 aaPredicted RBP16.65■□□□□ 0.26
TNF-208ENST00000449264 RTEL1Q9NZ71 1219 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 GOLGA6L22H0YM25 854 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 TDP2O95551 362 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 FCER1AP12319 257 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 HSPA6P17066 643 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 MAP2K2P36507 400 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 NASPP49321 788 aaPredicted RBP16.65■□□□□ 0.26
TNF-208ENST00000449264 C1QTNF8P60827 252 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 C17orf99Q6UX52 265 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 LEO1Q8WVC0 666 aaPredicted RBP16.65■□□□□ 0.26
TNF-208ENST00000449264 RMDN3Q96TC7 470 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.65■□□□□ 0.26
TNF-208ENST00000449264 PLXNA1Q9UIW2 1896 aa16.65■□□□□ 0.26
TNF-208ENST00000449264 POTEB2H3BUK9 544 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 PGK2P07205 417 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 ARHGEF16Q5VV41 709 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 CEP131Q9UPN4 1083 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 IVNS1ABPQ9Y6Y0 642 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 MGAMO43451 1857 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 DOCK3Q8IZD9 2030 aa16.64■□□□□ 0.25
TNF-208ENST00000449264 RPTORQ8N122 1335 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 YEATS4O95619 227 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 CNTN2Q02246 1040 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 GPR142Q7Z601 462 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 LINC00301Q8NCQ3 95 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 IL31RAQ8NI17 732 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 PXMP2Q9NR77 195 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 ZSWIM8A7E2V4 1837 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 FRMPD4Q14CM0 1322 aa16.63■□□□□ 0.25
TNF-208ENST00000449264 SPTLC2O15270 562 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 EDIL3O43854 480 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 TBC1D8O95759 1140 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 MARCKSP29966 332 aaPredicted RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 MAPK4P31152 587 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 MCM4P33991 863 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 ZNF76P36508 570 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 PTPAQ15257 358 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 CSPP1Q1MSJ5 1256 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 POTEDQ86YR6 584 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 CRYGNQ8WXF5 182 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 ZFP91Q96JP5 570 aaPredicted RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 MAF1Q9H063 256 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 MRVI1Q9Y6F6 885 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 MCM3APO60318 1980 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 SLC37A4O43826 429 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 NEMFO60524 1076 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 PRPF40AO75400 957 aaKnown RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 TRPA1O75762 1119 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 MYCLP12524 364 aaPredicted RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 ME1P48163 572 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 USP11P51784 963 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 PTGDRQ13258 359 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 SLC39A14Q15043 492 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 PGM5Q15124 567 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.62■□□□□ 0.25
TNF-208ENST00000449264 PLEKHH3Q7Z736 793 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 KCNG4Q8TDN1 519 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 NSUN6Q8TEA1 469 aaKnown RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 PDCD2LQ9BRP1 358 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 DDX25Q9UHL0 483 aaKnown RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 DDX49Q9Y6V7 483 aaKnown RBP16.62■□□□□ 0.25
TNF-208ENST00000449264 CEP350Q5VT06 3117 aa16.62■□□□□ 0.25
TNF-208ENST00000449264 BMP15O95972 392 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 GCFC2P16383 781 aaKnown RBP16.61■□□□□ 0.25
TNF-208ENST00000449264 ADORA2AP29274 412 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 NFKBIBQ15653 356 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 PRR16Q569H4 304 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 FAM133AQ8N9E0 248 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 NAP1L4Q99733 375 aaKnown RBP16.61■□□□□ 0.25
TNF-208ENST00000449264 RNF186Q9NXI6 227 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 RCOR1Q9UKL0 485 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 LRRC37A2A6NM11 1700 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 ZNF236Q9UL36 1845 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 ASTN1O14525 1302 aa16.61■□□□□ 0.25
TNF-208ENST00000449264 DDX11L8A8MPP1 907 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 FAM86B1E9PN63 330 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 CYP3A4P08684 503 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 FAM86B2P0C5J1 330 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 ALDH5A1P51649 535 aaPredicted RBP16.6■□□□□ 0.25
TNF-208ENST00000449264 PCNX4Q63HM2 1172 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 PPP4R3AQ6IN85 833 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 TMEM87AQ8NBN3 555 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 TMEM60Q9H2L4 133 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 ADD3Q9UEY8 706 aaKnown RBP16.6■□□□□ 0.25
TNF-208ENST00000449264 ELP1O95163 1332 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 KIAA1217Q5T5P2 1943 aa16.6■□□□□ 0.25
TNF-208ENST00000449264 SOWAHBA6NEL2 793 aa16.59■□□□□ 0.25
TNF-208ENST00000449264 STRNO43815 780 aa16.59■□□□□ 0.25
TNF-208ENST00000449264 PTPREP23469 700 aa16.59■□□□□ 0.25
TNF-208ENST00000449264 CCND2P30279 289 aa16.59■□□□□ 0.25
TNF-208ENST00000449264 ATP2C1P98194 919 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms