RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 BARD1Q99728 777 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GRIP2Q9C0E4 1043 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 RASSF4Q9H2L5 321 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 RUBCNLQ9H714 662 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 BRD9Q9H8M2 597 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 LGR6Q9HBX8 967 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 SPTLC3Q9NUV7 552 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CWC25Q9NXE8 425 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PABPN1LA6NDY0 278 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 C9IYK1 514 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 J3QW42 95 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 M0R3H8 397 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 DTNBO60941 627 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 TMCC2O75069 709 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GLRX3O76003 335 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ITGA4P13612 1032 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ATP4AP20648 1035 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ITGA6P23229 1130 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 MSX1P28360 303 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ALDH5A1P51649 535 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 UAP1L1Q3KQV9 507 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 COL13A1Q5TAT6 717 aaPredicted RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PGBD2Q6P3X8 592 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GPBAR1Q8TDU6 330 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 KCTD12Q96CX2 325 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ACO2Q99798 780 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ISCA1Q9BUE6 129 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 PBX4Q9BYU1 374 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 GSX2Q9BZM3 304 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 UNC45AQ9H3U1 944 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 FNIP2Q9P278 1114 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 FBXL21Q9UKT6 434 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 CSADQ9Y600 493 aa2.73□□□□□ -1.97
CCDC88A-208ENST00000444458 ITIH6Q6UXX5 1313 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM83GA6ND36 823 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SYNDIG1LA6NDD5 238 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SMTNL1A8MU46 457 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 WDR64B1ANS9 1081 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 H3BRJ5 948 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GFPT2O94808 682 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SOD2P04179 222 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GSTP1P09211 210 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PTPRAP18433 802 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PEX2P28328 305 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CDC25BP30305 580 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ELF1P32519 619 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 DNM2P50570 870 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CLNS1AP54105 237 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CACNB3P54284 484 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 USP14P54578 494 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ST5P78524 1137 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 HTRA3P83110 453 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GSTM4Q03013 218 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 AP3B2Q13367 1082 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PPP2R5DQ14738 602 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 KIF22Q14807 665 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PSMD6Q15008 389 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CCNG2Q16589 344 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CLEC16AQ2KHT3 1053 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 DACT2Q5SW24 774 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ANKLE2Q86XL3 938 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 KIF18BQ86Y91 864 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CBARPQ8N350 705 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 KDF1Q8NAX2 398 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 UCMAQ8WVF2 138 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 TEKT5Q96M29 485 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 TAAR9Q96RI9 348 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GAS2L1Q99501 681 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CORO1BQ9BR76 489 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SDF4Q9BRK5 362 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 LACRTQ9GZZ8 138 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ZFAND3Q9H8U3 227 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 IFT80Q9P2H3 777 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CORO2BQ9UQ03 480 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CRYL1Q9Y2S2 319 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 NUB1Q9Y5A7 615 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SNCAIPQ9Y6H5 919 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ANKRD18BA2A2Z9 1011 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 DCDC2CA8MYV0 355 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 RASA4BC9J798 803 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CBX4O00257 560 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GOLIM4O00461 696 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 RASA4O43374 803 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 H2AFYO75367 372 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GRNP28799 593 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SOX18P35713 384 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ECE1P42892 770 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PLIN5Q00G26 463 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PRKG1Q13976 671 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 IKBKEQ14164 716 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM47CQ5HY64 1035 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 FKBP15Q5T1M5 1219 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ANKRD45Q5TZF3 282 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CDCP2Q5VXM1 449 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 DCAF15Q66K64 600 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC33Q8N5R6 958 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GSTCDQ8NEC7 633 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 TGFBRAP1Q8WUH2 860 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SMARCC1Q92922 1105 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 BRF1Q92994 677 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms