RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 PCDHA8Q9Y5H6 950 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 PCDHA1Q9Y5I3 950 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 RPTORQ8N122 1335 aa12.87□□□□□ -0.35
LINC00539-203ENST00000434601 ALPK3Q96L96 1907 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 PLXNB2O15031 1838 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 FLOT1O75955 427 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 USH1GQ495M9 461 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 PRPF38AQ8NAV1 312 aaKnown RBP12.86□□□□□ -0.35
LINC00539-203ENST00000434601 GPT2Q8TD30 523 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 GTF3C2Q8WUA4 911 aaPredicted RBP12.86□□□□□ -0.35
LINC00539-203ENST00000434601 PRO3102Q9H379 93 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 PPP1R9AQ9ULJ8 1098 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 RLFQ13129 1914 aa12.86□□□□□ -0.35
LINC00539-203ENST00000434601 A0A0G2JMZ2 1700 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 GOLGA6L4A6NEF3 574 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 SPTLC2O15270 562 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 MRPL12P52815 198 aaKnown RBP12.85□□□□□ -0.35
LINC00539-203ENST00000434601 SLC39A14Q15043 492 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 NONOQ15233 471 aaKnown RBP eCLIP12.85□□□□□ -0.35
LINC00539-203ENST00000434601 PTPAQ15257 358 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 TTC38Q5R3I4 469 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 CCDC174Q6PII3 467 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 SAMD1Q6SPF0 538 aaPredicted RBP12.85□□□□□ -0.35
LINC00539-203ENST00000434601 CCAR1Q8IX12 1150 aaKnown RBP12.85□□□□□ -0.35
LINC00539-203ENST00000434601 TRMT44Q8IYL2 757 aaKnown RBP12.85□□□□□ -0.35
LINC00539-203ENST00000434601 GPRC5AQ8NFJ5 357 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 SOCS4Q8WXH5 440 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 PAWRQ96IZ0 340 aaKnown RBP12.85□□□□□ -0.35
LINC00539-203ENST00000434601 PGBD1Q96JS3 809 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 NUDT12Q9BQG2 462 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 ANP32EQ9BTT0 268 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 GJD2Q9UKL4 321 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 CEP131Q9UPN4 1083 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 ABCB11O95342 1321 aa12.85□□□□□ -0.35
LINC00539-203ENST00000434601 PPP6R2O75170 966 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 BMP15O95972 392 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 ICAM1P05362 532 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 FDX1P10109 184 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 XRCC5P13010 732 aaKnown RBP12.84□□□□□ -0.35
LINC00539-203ENST00000434601 TAL1P17542 331 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-203ENST00000434601 ATP2B1P20020 1258 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 MAPK4P31152 587 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 ME1P48163 572 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 CLK2P49760 499 aaKnown RBP12.84□□□□□ -0.35
LINC00539-203ENST00000434601 UBE2SQ16763 222 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 JAKMIP3Q5VZ66 844 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 TEX2Q8IWB9 1127 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 P2RX7Q99572 595 aaKnown RBP12.84□□□□□ -0.35
LINC00539-203ENST00000434601 PSTPIP2Q9H939 334 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 SLC38A10Q9HBR0 1119 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.84□□□□□ -0.35
LINC00539-203ENST00000434601 PCDHB6Q9Y5E3 794 aa12.84□□□□□ -0.35
LINC00539-203ENST00000434601 MORC2Q9Y6X9 1032 aaPredicted RBP12.84□□□□□ -0.35
LINC00539-203ENST00000434601 COL11A1P12107 1806 aaPredicted RBP12.83□□□□□ -0.35
LINC00539-203ENST00000434601 USP17L15C9J2P7 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L13C9JLJ4 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L11C9JVI0 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L18D6R9N7 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L22D6RA61 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L17D6RBQ6 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L19D6RCP7 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L20D6RJB6 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 WNT7AO00755 349 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 HERVK_113P62684 666 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 USP17L24Q0WX57 530 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 AP3B2Q13367 1082 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 INF2Q27J81 1249 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 TMEM260Q9NX78 707 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 PNMA2Q9UL42 364 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 CCPG1Q9ULG6 757 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 MRPL11Q9Y3B7 192 aaKnown RBP12.83□□□□□ -0.36
LINC00539-203ENST00000434601 CTDP1Q9Y5B0 961 aaPredicted RBP12.83□□□□□ -0.36
LINC00539-203ENST00000434601 ZNF536O15090 1300 aa12.83□□□□□ -0.36
LINC00539-203ENST00000434601 ZBED4O75132 1171 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 CYP2B6P20813 491 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 DSG3P32926 999 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 TPRNQ4KMQ1 711 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 MCTP2Q6DN12 878 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 CATSPERGQ6ZRH7 1159 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 NEK8Q86SG6 692 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 ATG4CQ96DT6 458 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 PCDHA7Q9UN72 937 aa12.82□□□□□ -0.36
LINC00539-203ENST00000434601 DNAH12Q6ZR08 3092 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 A0A1W2PQ27 194 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 A0A1W2PQ64 194 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 A0A1W2PQD8 194 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 PIK3CDO00329 1044 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 VWA5AO00534 786 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 MEIS2O14770 477 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 OPLAHO14841 1288 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 MARCKSP29966 332 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-203ENST00000434601 BMP8BP34820 402 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 ERVK-9P63128 1117 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 ERVK-24P63145 666 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 CCNA1P78396 465 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 ORC2Q13416 577 aaPredicted RBP12.81□□□□□ -0.36
LINC00539-203ENST00000434601 COG2Q14746 738 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 ZNF174Q15697 407 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 MAP3K21Q5TCX8 1036 aa12.81□□□□□ -0.36
LINC00539-203ENST00000434601 ADALQ6DHV7 355 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms