RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 TBCKQ8TEA7 893 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 MMTAG2Q9BU76 263 aaKnown RBP12.58□□□□□ -0.4
USP4-205ENST00000431357 EDEM3Q9BZQ6 932 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 SUGCTQ9HAC7 445 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 HDAC6Q9UBN7 1215 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 PLAGL2Q9UPG8 496 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 MTMR7Q9Y216 660 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 FAN1Q9Y2M0 1017 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 RTCBQ9Y3I0 505 aaKnown RBP12.58□□□□□ -0.4
USP4-205ENST00000431357 GPR75-ASB3A0A0A6YYF3 556 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 FCER1AP12319 257 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 GYS2P54840 703 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 LRRC63Q05C16 580 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 ITIH3Q06033 890 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 PSMD2Q13200 908 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 PDIA5Q14554 519 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 MAN2A1Q16706 1144 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 ARHGAP27Q6ZUM4 889 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 GUF1Q8N442 669 aaKnown RBP12.57□□□□□ -0.4
USP4-205ENST00000431357 MTMR9Q96QG7 549 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 LACRTQ9GZZ8 138 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 SEMA6BQ9H3T3 888 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 RIOX1Q9H6W3 641 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 LRWD1Q9UFC0 647 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 SAP30BPQ9UHR5 308 aaKnown RBP12.57□□□□□ -0.4
USP4-205ENST00000431357 JRKLQ9Y4A0 524 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 SNED1Q8TER0 1413 aa12.57□□□□□ -0.4
USP4-205ENST00000431357 LRRIQ3A6PVS8 624 aaPredicted RBP12.56□□□□□ -0.4
USP4-205ENST00000431357 GNPATO15228 680 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 LCA5LO95447 670 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 IDEP14735 1019 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 BTDP43251 543 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 TEX11Q8IYF3 940 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 GOLGA6L1Q8N7Z2 621 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 KIAA0895Q8NCT3 520 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 CDK5RAP3Q96JB5 506 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 NDST4Q9H3R1 872 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 RCCD1A6NED2 376 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 KLK7P49862 253 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 GRB10Q13322 594 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 CALCRLQ16602 461 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 ZNF572Q7Z3I7 529 aaPredicted RBP12.56□□□□□ -0.4
USP4-205ENST00000431357 MMGT1Q8N4V1 131 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 LARP4BQ92615 738 aaKnown RBP12.56□□□□□ -0.4
USP4-205ENST00000431357 FAM163AQ96GL9 167 aaPredicted RBP12.56□□□□□ -0.4
USP4-205ENST00000431357 PIGSQ96S52 555 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 RIC8AQ9NPQ8 531 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 SIK3Q9Y2K2 1263 aa12.56□□□□□ -0.4
USP4-205ENST00000431357 SRGAP2O75044 1071 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 N4BP1O75113 896 aaKnown RBP12.55□□□□□ -0.4
USP4-205ENST00000431357 CAPN2P17655 700 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 TXKP42681 527 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 SEPT2Q15019 361 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 USP17L2Q6R6M4 530 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 CCNI2Q6ZMN8 369 aaPredicted RBP12.55□□□□□ -0.4
USP4-205ENST00000431357 COG1Q8WTW3 980 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 CAPZA3Q96KX2 299 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 TSG101Q99816 390 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 SLC39A2Q9NP94 309 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 JADE2Q9NQC1 790 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 BLOC1S4Q9NUP1 217 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 BIN2Q9UBW5 565 aaPredicted RBP12.55□□□□□ -0.4
USP4-205ENST00000431357 SNX12Q9UMY4 172 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 PCDHA13Q9Y5I0 950 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 SBF2Q86WG5 1849 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 MYMKA6NI61 221 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 ATP2B4P23634 1241 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 TNNT3P45378 269 aaPredicted RBP12.55□□□□□ -0.4
USP4-205ENST00000431357 KCNQ4P56696 695 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 RAD51AP2Q09MP3 1159 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 GRIK5Q16478 980 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 CCDC96Q2M329 555 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 ASPRV1Q53RT3 343 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 PPP1R18Q6NYC8 613 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 POTEDQ86YR6 584 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 PROM2Q8N271 834 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 CCDC24Q8N4L8 307 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 PNMA5Q96PV4 448 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 ALS2CR12Q96Q35 445 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 IFIH1Q9BYX4 1025 aaKnown RBP12.55□□□□□ -0.4
USP4-205ENST00000431357 SH2D4AQ9H788 454 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 HPCAL4Q9UM19 191 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 TFR2Q9UP52 801 aa12.55□□□□□ -0.4
USP4-205ENST00000431357 PLIN4Q96Q06 1357 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 MACROD2A1Z1Q3 448 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 IL1R1P14778 569 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 TCP1P17987 556 aaKnown RBP12.54□□□□□ -0.4
USP4-205ENST00000431357 ADCY7P51828 1080 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 CYP27A1Q02318 531 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 KRT79Q5XKE5 535 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 SMIM5Q71RC9 77 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 CCDC155Q8N6L0 562 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 CEP120Q8N960 986 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 RAD54LQ92698 747 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 ARHGEF1Q92888 912 aaKnown RBP12.54□□□□□ -0.4
USP4-205ENST00000431357 CEP95Q96GE4 821 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 NUCKS1Q9H1E3 243 aaKnown RBP12.54□□□□□ -0.4
USP4-205ENST00000431357 CPVLQ9H3G5 476 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 DEF6Q9H4E7 631 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms