RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-204	ENST00000431283	MC3R	P41968	323 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	SLURP1	P55000	103 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	LARP1B	Q659C4	914 aa	Known RBP	7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	GTF2IRD2B	Q6EKJ0	949 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	IQCE	Q6IPM2	695 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	FRMD5	Q7Z6J6	570 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	GTF2IRD2	Q86UP8	949 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	TEPSIN	Q96N21	525 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	MTA3	Q9BTC8	594 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	CYP26B1	Q9NR63	512 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	MARCH2	Q9P0N8	246 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	PLA2G2D	Q9UNK4	145 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	MRVI1	Q9Y6F6	885 aa		7.66	□□□□□ -1.18
PTPN4-204	ENST00000431283	NTRK1	P04629	796 aa		7.65	□□□□□ -1.18
PTPN4-204	ENST00000431283	SV2C	Q496J9	727 aa		7.65	□□□□□ -1.18
PTPN4-204	ENST00000431283	TRIM59	Q8IWR1	403 aa		7.65	□□□□□ -1.18
PTPN4-204	ENST00000431283	TP53I13	Q8NBR0	393 aa	Predicted RBP	7.65	□□□□□ -1.18
PTPN4-204	ENST00000431283	COPS5	Q92905	334 aa		7.65	□□□□□ -1.18
PTPN4-204	ENST00000431283	MMP19	Q99542	508 aa		7.65	□□□□□ -1.18
PTPN4-204	ENST00000431283	SMAD7	O15105	426 aa	Known RBP	7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	THBD	P07204	575 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	CACNB2	Q08289	660 aa	Predicted RBP	7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	LIPI	Q6XZB0	460 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	SAPCD2	Q86UD0	394 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	SMARCC2	Q8TAQ2	1214 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	CPA5	Q8WXQ8	436 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	ADAM7	Q9H2U9	754 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	FBLN5	Q9UBX5	448 aa		7.64	□□□□□ -1.19
PTPN4-204	ENST00000431283	MYO1B	O43795	1136 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	PPP1R11	O60927	126 aa	Predicted RBP	7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	DDAH1	O94760	285 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	PLA2G1B	P04054	148 aa	Known RBP	7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	VWA3B	Q502W6	1294 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	C6orf15	Q6UXA7	325 aa	Predicted RBP	7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	TTLL7	Q6ZT98	887 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	FAM178B	Q8IXR5	827 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	ADGRG2	Q8IZP9	1017 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	ZNF513	Q8N8E2	541 aa	Predicted RBP	7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	DDX11	Q96FC9	970 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	SPATA25	Q9BR10	227 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	NKX2-4	Q9H2Z4	354 aa		7.63	□□□□□ -1.19
PTPN4-204	ENST00000431283	C22orf46	C9J442	243 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	SMARCA5	O60264	1052 aa	Predicted RBP	7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	CYP2C8	P10632	490 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	RPL11	P62913	178 aa	Known RBP	7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	HTRA3	P83110	453 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	FXN	Q16595	210 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	NT5DC1	Q5TFE4	455 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	TEX2	Q8IWB9	1127 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	ZNF526	Q8TF50	670 aa	Predicted RBP	7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	ZBTB8A	Q96BR9	441 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	PCDH18	Q9HCL0	1135 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	NTM	Q9P121	344 aa		7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283	R3HCC1	Q9Y3T6	440 aa	Known RBP	7.62	□□□□□ -1.19
PTPN4-204	ENST00000431283		A0A1B0GTL3	188 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	SNRPB2	P08579	225 aa	Known RBP	7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	ECI1	P42126	302 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	KCNJ6	P48051	423 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	GTF2A2	P52657	109 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	GJA9	P57773	515 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	UBXN11	Q5T124	520 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	E4F1	Q66K89	784 aa	Predicted RBP	7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	ETV3L	Q6ZN32	361 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	ZC3H18	Q86VM9	953 aa	Known RBP	7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	BTN2A2	Q8WVV5	523 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	YIPF4	Q9BSR8	244 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	SIT1	Q9Y3P8	196 aa		7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	TIMM13	Q9Y5L4	95 aa	Predicted RBP	7.61	□□□□□ -1.19
PTPN4-204	ENST00000431283	SH3D21	A4FU49	640 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	MEFV	O15553	781 aa	Predicted RBP	7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	HOXC12	P31275	282 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	PLP2	Q04941	152 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	KCNAB2	Q13303	367 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	MBLAC2	Q68D91	279 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	PRRT2	Q7Z6L0	340 aa	Predicted RBP	7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	CARF	Q8N187	725 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	PLEKHO2	Q8TD55	490 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	SEC14L1	Q92503	715 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	DIO2	Q92813	273 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	TRMT2B	Q96GJ1	504 aa	Known RBP	7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	MRGPRX3	Q96LB0	322 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	CCDC140	Q96MF4	163 aa		7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	COA3	Q9Y2R0	106 aa	Predicted RBP	7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	CCDC9	Q9Y3X0	531 aa	Known RBP	7.6	□□□□□ -1.19
PTPN4-204	ENST00000431283	AGRP	O00253	132 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	CP	P00450	1065 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	SARS	P49591	514 aa	Known RBP	7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	MROH9	Q5TGP6	573 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	CEP68	Q76N32	757 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	FRS2	Q8WU20	508 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	TMEM169	Q96HH4	297 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	BDH2	Q9BUT1	245 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	LGR4	Q9BXB1	951 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	PRKAG3	Q9UGI9	489 aa		7.59	□□□□□ -1.19
PTPN4-204	ENST00000431283	SUSD5	O60279	629 aa		7.58	□□□□□ -1.2
PTPN4-204	ENST00000431283	ITGAV	P06756	1048 aa		7.58	□□□□□ -1.2
PTPN4-204	ENST00000431283	TCF3	P15923	654 aa		7.58	□□□□□ -1.2
PTPN4-204	ENST00000431283	INF2	Q27J81	1249 aa		7.58	□□□□□ -1.2
PTPN4-204	ENST00000431283	CD300LD	Q6UXZ3	194 aa		7.58	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms