RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 NPY5RQ15761 445 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 PPP1R18Q6NYC8 613 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 HEATR3Q7Z4Q2 680 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 TRMT44Q8IYL2 757 aaKnown RBP14.32□□□□□ -0.12
USP40-205ENST00000430158 MSL3Q8N5Y2 521 aaKnown RBP14.32□□□□□ -0.12
USP40-205ENST00000430158 ZNF713Q8N859 430 aaPredicted RBP14.32□□□□□ -0.12
USP40-205ENST00000430158 TRPV1Q8NER1 839 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 ZNF333Q96JL9 665 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 TAAR1Q96RJ0 339 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 TINF2Q9BSI4 451 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 DDX49Q9Y6V7 483 aaKnown RBP14.32□□□□□ -0.12
USP40-205ENST00000430158 ESYT2A0FGR8 921 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 PTPDC1A2A3K4 754 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 DEXIO95424 95 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 HMGCRP04035 888 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 INHAP05111 366 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 CALML3P27482 149 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 HOXA13P31271 388 aaPredicted RBP14.31□□□□□ -0.12
USP40-205ENST00000430158 CYP2C19P33261 490 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 CACNB2Q08289 660 aaPredicted RBP14.31□□□□□ -0.12
USP40-205ENST00000430158 USP17L6PQ6QN14 398 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 TEX2Q8IWB9 1127 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 CCDC83Q8IWF9 413 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 SNX21Q969T3 373 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 LLPHQ9BRT6 129 aaKnown RBP14.31□□□□□ -0.12
USP40-205ENST00000430158 ZMYND12Q9H0C1 365 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 RIC8AQ9NPQ8 531 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 SH3GLB2Q9NR46 395 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 SLC5A4Q9NY91 659 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 FRMPD4Q14CM0 1322 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 SYNGAP1Q96PV0 1343 aa14.31□□□□□ -0.12
USP40-205ENST00000430158 LOC102724159A0A0B4J2E5 919 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 GCOM1H8Y6P7 765 aaPredicted RBP14.3□□□□□ -0.12
USP40-205ENST00000430158 CDKL5O76039 1030 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 CFBP00751 764 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 POLR2MP0CAP2 368 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 CYBAP13498 195 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 TIE1P35590 1138 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 CLK2P49760 499 aaKnown RBP14.3□□□□□ -0.12
USP40-205ENST00000430158 ALDH5A1P51649 535 aaPredicted RBP14.3□□□□□ -0.12
USP40-205ENST00000430158 CUL4AQ13619 759 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 PWP2Q15269 919 aaKnown RBP14.3□□□□□ -0.12
USP40-205ENST00000430158 SLC9C1Q4G0N8 1177 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 CPLX2Q6PUV4 134 aaKnown RBP14.3□□□□□ -0.12
USP40-205ENST00000430158 TRIM22Q8IYM9 498 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 DNERQ8NFT8 737 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 PSTPIP2Q9H939 334 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 ORC3Q9UBD5 711 aaPredicted RBP14.3□□□□□ -0.12
USP40-205ENST00000430158 KIAA1217Q5T5P2 1943 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 RPTORQ8N122 1335 aa14.3□□□□□ -0.12
USP40-205ENST00000430158 BRCA2P51587 3418 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 MYH7BA7E2Y1 1941 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 SMCO2A6NFE2 343 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 ZNF865P0CJ78 1059 aaPredicted RBP14.29□□□□□ -0.12
USP40-205ENST00000430158 NAPAP54920 295 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 MTFR1Q15390 333 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 PRAMEF19Q5SWL8 479 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 ARMCX2Q7L311 632 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 FAM177A1Q8N128 213 aaPredicted RBP14.29□□□□□ -0.12
USP40-205ENST00000430158 GJB4Q9NTQ9 266 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 VPS54Q9P1Q0 977 aa14.29□□□□□ -0.12
USP40-205ENST00000430158 M0R2N6 131 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 AKAP17AQ02040 695 aaKnown RBP14.28□□□□□ -0.12
USP40-205ENST00000430158 UBE2SQ16763 222 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 MFSD14CQ5VZR4 134 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 IL31RAQ8NI17 732 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 ABHD8Q96I13 439 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 RMDN3Q96TC7 470 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 PDCD2LQ9BRP1 358 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 UNC93B1Q9H1C4 597 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 PAK6Q9NQU5 681 aaPredicted RBP14.28□□□□□ -0.12
USP40-205ENST00000430158 PXMP2Q9NR77 195 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.28□□□□□ -0.12
USP40-205ENST00000430158 ADD3Q9UEY8 706 aaKnown RBP14.28□□□□□ -0.12
USP40-205ENST00000430158 NRBP1Q9UHY1 535 aa14.28□□□□□ -0.12
USP40-205ENST00000430158 ASB14A6NK59 587 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 EDIL3O43854 480 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 CCND3P30281 292 aaPredicted RBP14.27□□□□□ -0.13
USP40-205ENST00000430158 ADCY7P51828 1080 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 MRPL12P52815 198 aaKnown RBP14.27□□□□□ -0.13
USP40-205ENST00000430158 TAPT1Q6NXT6 567 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 VSIG10LQ86VR7 867 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 DAGLBQ8NCG7 672 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 NSUN6Q8TEA1 469 aaKnown RBP14.27□□□□□ -0.13
USP40-205ENST00000430158 CRYGNQ8WXF5 182 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 CUL5Q93034 780 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 IWS1Q96ST2 819 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 PHF20Q9BVI0 1012 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 FRMPD3Q5JV73 1810 aa14.27□□□□□ -0.13
USP40-205ENST00000430158 RBM47A0AV96 593 aaKnown RBP14.26□□□□□ -0.13
USP40-205ENST00000430158 RGS20O76081 388 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 NR3C2P08235 984 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 CCL5P13501 91 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 PGM5Q15124 567 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 FCHSD1Q86WN1 690 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 TNS4Q8IZW8 715 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 ALG1Q9BT22 464 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 GLT8D2Q9H1C3 349 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 TMEM260Q9NX78 707 aa14.26□□□□□ -0.13
USP40-205ENST00000430158 ADCY6O43306 1168 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms