RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 USP17L13C9JLJ4 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L11C9JVI0 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L18D6R9N7 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L22D6RA61 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L17D6RBQ6 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L19D6RCP7 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L20D6RJB6 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 UBAP1LF5GYI3 381 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 KIF5BP33176 963 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 KIF11P52732 1056 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L24Q0WX57 530 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USH1GQ495M9 461 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 GJB7Q6PEY0 223 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L6PQ6QN14 398 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 SPATA20Q8TB22 786 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 EXOC4Q96A65 974 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 CCDC43Q96MW1 224 aaKnown RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 SETDB2Q96T68 719 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 PPANQ9NQ55 473 aaKnown RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 SEC63Q9UGP8 760 aaKnown RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 LIMA1Q9UHB6 759 aaKnown RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 COL1A1P02452 1464 aaPredicted RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 AKAP11Q9UKA4 1901 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 WHAMMP3Q1A5X7 153 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 KIAA0895Q8NCT3 520 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 WDR19Q8NEZ3 1342 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 TNFRSF25Q93038 417 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 EYA3Q99504 573 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 CHMP2AO43633 222 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 NKX1-1Q15270 411 aaPredicted RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 TEX11Q8IYF3 940 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 LINC00116Q8NCU8 138 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 FAM76AQ8TAV0 307 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 TBC1D5Q92609 795 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 MTMR8Q96EF0 704 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 CEP95Q96GE4 821 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 PCDHA13Q9Y5I0 950 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 MYH15Q9Y2K3 1946 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 COL4A1P02462 1669 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 COL5A2P05997 1499 aaPredicted RBP9.6□□□□□ -0.87
USP40-203ENST00000427112 H7C1D1 291 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 CLIC2O15247 247 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 AMPD2Q01433 879 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 LSM14BQ9BX40 385 aaKnown RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 TRIM9Q9C026 710 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 DPH5Q9H2P9 285 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 RBM28Q9NW13 759 aaKnown RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 FBXO3Q9UK99 471 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 SLIT3O75094 1523 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 TMEM110-MUSTN1A8MSY1 372 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 KLRC4O43908 158 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 OR52Z1P0C646 297 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 SPAG1Q07617 926 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 DOK7Q18PE1 504 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 ODF2Q5BJF6 829 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 TTI2Q6NXR4 508 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 TRAPPC11Q7Z392 1133 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 ZSCAN29Q8IWY8 852 aaPredicted RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 NAA15Q9BXJ9 866 aaKnown RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 RMND1Q9NWS8 449 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 MAD2L2Q9UI95 211 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 PCDHAC2Q9Y5I4 1007 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 KCPQ6ZWJ8 1503 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 ZNF804BA4D1E1 1349 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 PNPLA7Q6ZV29 1317 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 MYCNP04198 464 aaPredicted RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 ABCB4P21439 1286 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 BTDP43251 543 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 RBM5P52756 815 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP40-203ENST00000427112 DHX9Q08211 1270 aaKnown RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 ADCY1Q08828 1119 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 C8orf74Q6P047 294 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 CALML4Q96GE6 196 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 C8orf37Q96NL8 207 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 HAUS4Q9H6D7 363 aa9.59□□□□□ -0.87
USP40-203ENST00000427112 N4BP2Q86UW6 1770 aaPredicted RBP9.59□□□□□ -0.87
USP40-203ENST00000427112 TLDC2A0PJX2 215 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 TACC1O75410 805 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 ECM1Q16610 540 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 DPP8Q6V1X1 898 aaPredicted RBP9.58□□□□□ -0.88
USP40-203ENST00000427112 PHLDB2Q86SQ0 1253 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 CCDC47Q96A33 483 aaKnown RBP9.58□□□□□ -0.88
USP40-203ENST00000427112 NDST4Q9H3R1 872 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 GOPCQ9HD26 462 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 PALMO75781 387 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 UFL1O94874 794 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 GLI1P08151 1106 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 CALM1P0DP23 149 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 CALM2P0DP24 149 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 CALM3P0DP25 149 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 KRT83P78385 493 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 NONOQ15233 471 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP40-203ENST00000427112 CALCRLQ16602 461 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 TTC31Q49AM3 519 aaPredicted RBP9.58□□□□□ -0.88
USP40-203ENST00000427112 HERC4Q5GLZ8 1057 aaPredicted RBP9.58□□□□□ -0.88
USP40-203ENST00000427112 SPICE1Q8N0Z3 855 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 GGT7Q9UJ14 662 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 RTCBQ9Y3I0 505 aaKnown RBP9.58□□□□□ -0.88
USP40-203ENST00000427112 NDUFAB1O14561 156 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 KCNK3O14649 394 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms