RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 MANEAQ5SRI9 462 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 LAIR1Q6GTX8 287 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 DCLRE1AQ6PJP8 1040 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 SLC44A3Q8N4M1 653 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 CAMKK1Q8N5S9 505 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 ACRBPQ8NEB7 543 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 C5orf34Q96MH7 638 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 RAD9AQ99638 391 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 CCDC77Q9BR77 488 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 SEZ6LQ9BYH1 1024 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 ADAM33Q9BZ11 813 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 CRNKL1Q9BZJ0 848 aaKnown RBP3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 LRRCC1Q9C099 1032 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 FAM49AQ9H0Q0 323 aaPredicted RBP3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 KCNF1Q9H3M0 494 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 CBX8Q9HC52 389 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 DYRK4Q9NR20 520 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 ASAP1Q9ULH1 1129 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 SCAF8Q9UPN6 1271 aaKnown RBP3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 TRPM2O94759 1503 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 RFX7Q2KHR2 1363 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 HEG1Q9ULI3 1381 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 IRS4O14654 1257 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 KLHL41O60662 606 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 CSF1RP07333 972 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 CYP2C18P33260 490 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 THPOP40225 353 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 HMGCS2P54868 508 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 KANK4Q5T7N3 995 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 ARMCX5Q6P1M9 558 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 GLYCTKQ8IVS8 523 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 LSMEM2Q8N112 164 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 METTL13Q8N6R0 699 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 PDCD7Q8N8D1 485 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 DEFB124Q8NES8 71 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 CAGE1Q8TC20 777 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 NACAP1Q9BZK3 213 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 GGNBP2Q9H3C7 697 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 AGPAT4Q9NRZ5 378 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 FBXO28Q9NVF7 368 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 CACNA1CQ13936 2221 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 MAGI3Q5TCQ9 1506 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF609O15014 1411 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 EMSYQ7Z589 1322 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 MAGEC1O60732 1142 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 RNF40O75150 1001 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 HOXB8P17481 243 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 SRP14P37108 136 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 GRSF1Q12849 480 aaKnown RBP eCLIP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 TCF15Q12870 199 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 PPM1LQ5SGD2 360 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 GPATCH4Q5T3I0 446 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 MTSS1LQ765P7 747 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 DTWD2Q8NBA8 298 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 OR6J1Q8NGC5 347 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 DDX23Q9BUQ8 820 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 PHF7Q9BWX1 381 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 VPS33BQ9H267 617 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 GOPCQ9HD26 462 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 SEPT11Q9NVA2 429 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 COQ3Q9NZJ6 369 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 FBXO10Q9UK96 956 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 AHDC1Q5TGY3 1603 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 XDHP47989 1333 aa3.15□□□□□ -1.91
CCDC88A-205ENST00000426576 SETD1AO15047 1707 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PABPN1LA6NDY0 278 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM171A2A8MVW0 826 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L15C9J2P7 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L13C9JLJ4 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L12C9JPN9 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L11C9JVI0 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L21D6R901 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L18D6R9N7 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L22D6RA61 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L17D6RBQ6 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L19D6RCP7 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L20D6RJB6 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF263O14978 683 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PROS1P07225 676 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CYP2C8P10632 490 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CYP2C19P33261 490 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L24Q0WX57 530 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ABRQ12979 859 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 TRDNQ13061 729 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SLC39A6Q13433 755 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 RC3H1Q5TC82 1133 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SULT6B1Q6IMI4 303 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 ANKRD23Q86SG2 305 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PAQR7Q86WK9 346 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 CPT1CQ8TCG5 803 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 PXYLP1Q8TE99 480 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 BORCS6Q96GS4 357 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 GMCL1Q96IK5 515 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SLC2A13Q96QE2 648 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 SAP130Q9H0E3 1048 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 KIF9Q9HAQ2 790 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 RAPGEF2Q9Y4G8 1499 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 IGF1RP08069 1367 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 C4orf47A7E2U8 309 aa3.14□□□□□ -1.91
CCDC88A-205ENST00000426576 USP17L10C9JJH3 530 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms