RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 JMJD8Q96S16 334 aa6.52□□□□□ -1.37
VPS54-204ENST00000416400 DLX3O60479 287 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 MYCLP1P12525 358 aaPredicted RBP6.51□□□□□ -1.37
VPS54-204ENST00000416400 PRKCAP17252 672 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 ITGB5P18084 799 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 CYP4F8P98187 520 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 AMPD3Q01432 767 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 KCNAB2Q13303 367 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 TRIM61Q5EBN2 209 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 FYB2Q5VWT5 728 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 USP53Q70EK8 1073 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 SIRT2Q8IXJ6 389 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 TMEM145Q8NBT3 493 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 CHAC2Q8WUX2 184 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 CLUHP3Q96NS8 147 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 MMP19Q99542 508 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 SLC6A17Q9H1V8 727 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 FAM53CQ9NYF3 392 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 IMPACTQ9P2X3 320 aa6.51□□□□□ -1.37
VPS54-204ENST00000416400 PAPLNO95428 1278 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 C6orf222P0C671 652 aaPredicted RBP6.5□□□□□ -1.37
VPS54-204ENST00000416400 PDE6BP35913 854 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 STAT3P40763 770 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 GABREP78334 506 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 SF1Q15637 639 aaKnown RBP6.5□□□□□ -1.37
VPS54-204ENST00000416400 PRSS53Q2L4Q9 553 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 ACBD5Q5T8D3 534 aaPredicted RBP6.5□□□□□ -1.37
VPS54-204ENST00000416400 CABP7Q86V35 215 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 THNSL2Q86YJ6 484 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 FRS2Q8WU20 508 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 RNF32Q9H0A6 362 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 CRTAC1Q9NQ79 661 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 INTS7Q9NVH2 962 aaKnown RBP6.5□□□□□ -1.37
VPS54-204ENST00000416400 NDOR1Q9UHB4 597 aa6.5□□□□□ -1.37
VPS54-204ENST00000416400 PDE8AO60658 829 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 EFCAB14O75071 495 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 PNLIPP16233 465 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 SOX5P35711 763 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 LTBRP36941 435 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 CORO7P57737 925 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 CT47A1Q5JQC4 288 aaPredicted RBP6.49□□□□□ -1.37
VPS54-204ENST00000416400 MCTP1Q6DN14 999 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 NLRX1Q86UT6 975 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 NPLOC4Q8TAT6 608 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 CHAMP1Q96JM3 812 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 CAAP1Q9H8G2 361 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 SLC52A2Q9HAB3 445 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 PDLIM7Q9NR12 457 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 BTG4Q9NY30 223 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 MAGEC2Q9UBF1 373 aaPredicted RBP6.49□□□□□ -1.37
VPS54-204ENST00000416400 ACSL6Q9UKU0 697 aa6.49□□□□□ -1.37
VPS54-204ENST00000416400 YBX2Q9Y2T7 364 aaKnown RBP6.49□□□□□ -1.37
VPS54-204ENST00000416400 TIMM13Q9Y5L4 95 aaPredicted RBP6.49□□□□□ -1.37
VPS54-204ENST00000416400 A0A087X0B3 334 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 C7orf72A4D263 438 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 KCNQ2O43526 872 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 RAB11FIP3O75154 756 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 GTF2A2P52657 109 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 RPL11P62913 178 aaKnown RBP6.48□□□□□ -1.37
VPS54-204ENST00000416400 TIGD5Q53EQ6 642 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 ADGRF1Q5T601 910 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 BICRALQ6AI39 1079 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 CNNM4Q6P4Q7 775 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 MAMDC2Q7Z304 686 aaPredicted RBP6.48□□□□□ -1.37
VPS54-204ENST00000416400 BRAPQ7Z569 592 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 LZTR1Q8N653 840 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 NLGN2Q8NFZ4 835 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 DCAF4Q8WV16 495 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 PTPRN2Q92932 1015 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 INTS4Q96HW7 963 aaKnown RBP6.48□□□□□ -1.37
VPS54-204ENST00000416400 PLCD4Q9BRC7 762 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 SP110Q9HB58 689 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 TRIM39Q9HCM9 518 aa6.48□□□□□ -1.37
VPS54-204ENST00000416400 BLACEA4D250 179 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 OR14I1A6ND48 311 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 PAX4O43316 350 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 MPOP05164 745 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 SDSP20132 328 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 GALK1P51570 392 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 TMEM62Q0P6H9 643 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 SLC35F1Q5T1Q4 408 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 OLFML2BQ68BL8 750 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 LRRTM3Q86VH5 581 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 RPUSD2Q8IZ73 545 aaKnown RBP6.47□□□□□ -1.37
VPS54-204ENST00000416400 KREMEN2Q8NCW0 462 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 GSTCDQ8NEC7 633 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 SLC7A14Q8TBB6 771 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 C1orf159Q96HA4 380 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 KRTAP4-12Q9BQ66 201 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 TARS2Q9BW92 718 aaKnown RBP6.47□□□□□ -1.37
VPS54-204ENST00000416400 GULP1Q9UBP9 304 aa6.47□□□□□ -1.37
VPS54-204ENST00000416400 NOTOA8MTQ0 251 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 GSG1L2A8MUP6 293 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 OPA1O60313 960 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 DNAJC8O75937 253 aaPredicted RBP6.46□□□□□ -1.38
VPS54-204ENST00000416400 FUCA1P04066 466 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 TACR1P25103 407 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 MVKQ03426 396 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 NTRK3Q16288 839 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 RSPO2Q6UXX9 243 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms