RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 MS4A1P11836 297 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 KCNJ6P48051 423 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 DEFB103AP81534 67 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 PTPN11Q06124 597 aaPredicted RBP11.31□□□□□ -0.6
RFFL-203ENST00000413582 BFSP2Q13515 415 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 GPNMBQ14956 572 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 LRRFIP1Q32MZ4 808 aaKnown RBP11.31□□□□□ -0.6
RFFL-203ENST00000413582 PPP4R3BQ5MIZ7 849 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 TMCO2Q7Z6W1 182 aaPredicted RBP11.31□□□□□ -0.6
RFFL-203ENST00000413582 CTAGE1Q96RT6 745 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 NACAP1Q9BZK3 213 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 UBE2ZQ9H832 354 aaPredicted RBP11.31□□□□□ -0.6
RFFL-203ENST00000413582 IL17RBQ9NRM6 502 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 LMCD1Q9NZU5 365 aa11.31□□□□□ -0.6
RFFL-203ENST00000413582 MICAL3Q7RTP6 2002 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 TSPY2A6NKD2 308 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 NKRFO15226 690 aaKnown RBP eCLIP11.3□□□□□ -0.6
RFFL-203ENST00000413582 FOXP2O15409 715 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 SLC3A2P08195 630 aaKnown RBP11.3□□□□□ -0.6
RFFL-203ENST00000413582 EDNRBP24530 442 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 NOVP48745 357 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 CCDC96Q2M329 555 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 BRDTQ58F21 947 aaPredicted RBP11.3□□□□□ -0.6
RFFL-203ENST00000413582 CAGE1Q8TC20 777 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 SCFD2Q8WU76 684 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 CLEC4DQ8WXI8 215 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 COPS5Q92905 334 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 SEC62Q99442 399 aaKnown RBP11.3□□□□□ -0.6
RFFL-203ENST00000413582 NAPBQ9H115 298 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 RCAN3Q9UKA8 241 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 NOD1Q9Y239 953 aa11.3□□□□□ -0.6
RFFL-203ENST00000413582 MYO7AQ13402 2215 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 PTPDC1A2A3K4 754 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 PRR33A8MZF0 331 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 KPNA6O60684 536 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 ARIH2O95376 493 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 SLC16A2P36021 539 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 ERVK-21P61565 698 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 RBL2Q08999 1139 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 TCTN1Q2MV58 587 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 LEXMQ3ZCV2 418 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 SYDE2Q5VT97 1194 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 TTBK2Q6IQ55 1244 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 BTNL9Q6UXG8 535 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 ALYREFQ86V81 257 aaKnown RBP11.29□□□□□ -0.6
RFFL-203ENST00000413582 FAM178BQ8IXR5 827 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 AFAP1L1Q8TED9 768 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 DCAF4Q8WV16 495 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 DHX38Q92620 1227 aaKnown RBP11.29□□□□□ -0.6
RFFL-203ENST00000413582 GPATCH3Q96I76 525 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 SUGCTQ9HAC7 445 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 MTUS1Q9ULD2 1270 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 MTMR7Q9Y216 660 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 KIAA1217Q5T5P2 1943 aa11.29□□□□□ -0.6
RFFL-203ENST00000413582 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.28□□□□□ -0.6
RFFL-203ENST00000413582 LINC01553A4QN01 128 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 NBNO60934 754 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 GJB5O95377 273 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 CXCL10P02778 98 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 SELPP16109 830 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 KCNA5P22460 613 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 CALML3P27482 149 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 CTDSPL2Q05D32 466 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 PDE4DQ08499 809 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 PTGISQ16647 500 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 GDF6Q6KF10 455 aaPredicted RBP11.28□□□□□ -0.6
RFFL-203ENST00000413582 CNKSR3Q6P9H4 555 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 RNF207Q6ZRF8 634 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 LRRC8DQ7L1W4 858 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 SESTD1Q86VW0 696 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 GJD3Q8N144 294 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 CCDC155Q8N6L0 562 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 TGS1Q96RS0 853 aaKnown RBP11.28□□□□□ -0.6
RFFL-203ENST00000413582 INCENPQ9NQS7 918 aa11.28□□□□□ -0.6
RFFL-203ENST00000413582 RBAK-RBAKDNI3L0D1 243 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 TXNP10599 105 aaKnown RBP11.27□□□□□ -0.61
RFFL-203ENST00000413582 IL9P15248 144 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 RPS6P62753 249 aaKnown RBP11.27□□□□□ -0.61
RFFL-203ENST00000413582 ZMYM1Q5SVZ6 1142 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 DNERQ8NFT8 737 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.27□□□□□ -0.61
RFFL-203ENST00000413582 KAT2BQ92831 832 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 RAD9AQ99638 391 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 ZBED2Q9BTP6 218 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 CHMP4BQ9H444 224 aaKnown RBP11.27□□□□□ -0.61
RFFL-203ENST00000413582 FRMPD2Q68DX3 1309 aaPredicted RBP11.27□□□□□ -0.61
RFFL-203ENST00000413582 WDR19Q8NEZ3 1342 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 ATG2AQ2TAZ0 1938 aa11.27□□□□□ -0.61
RFFL-203ENST00000413582 WDFY4Q6ZS81 3184 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 ABHD14A-ACY1A0A1B0GW23 586 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 ORC4O43929 436 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 RANBP6O60518 1105 aaKnown RBP11.26□□□□□ -0.61
RFFL-203ENST00000413582 PARNO95453 639 aaKnown RBP11.26□□□□□ -0.61
RFFL-203ENST00000413582 MMP3P08254 477 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 CKBP12277 381 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 CHMP4BP1P59074 171 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 CCDC62Q6P9F0 684 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 AFG1LQ8WV93 481 aa11.26□□□□□ -0.61
RFFL-203ENST00000413582 MPHOSPH6Q99547 160 aaKnown RBP11.26□□□□□ -0.61
RFFL-203ENST00000413582 NLRC5Q86WI3 1866 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms