RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 UBASH3AP57075 661 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 ARHGAP4P98171 946 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 XKR9Q5GH70 373 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 TBC1D22BQ9NU19 505 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 TRPC6Q9Y210 931 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 CALUO43852 315 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 UBXN2AP68543 259 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 CLEC17AQ6ZS10 378 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 GPBP1Q86WP2 473 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 MYCT1Q8N699 235 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 TIGD1Q96MW7 591 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 NACC1Q96RE7 527 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 RRAGCQ9HB90 399 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 FRMD4BQ9Y2L6 1034 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 COL4A3BPQ9Y5P4 624 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 TAF6LQ9Y6J9 622 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ESYT2A0FGR8 921 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 GLTPD2A6NH11 291 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ASB14A6NK59 587 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 CETN3O15182 167 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 TBC1D12O60347 775 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 PHACTR2O75167 634 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 TMOD1P28289 359 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SEC23AQ15436 765 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ZFYVE27Q5T4F4 411 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SEPT14Q6ZU15 432 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SPATA24Q86W54 205 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SAMD3Q8N6K7 520 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 MTMR14Q8NCE2 650 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SLC17A8Q8NDX2 589 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ANKS1AQ92625 1134 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SYMPKQ92797 1274 aaKnown RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 PGBD1Q96JS3 809 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 CICQ96RK0 1608 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 RUFY1Q96T51 708 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ZFYVE28Q9HCC9 887 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 PCDHB13Q9Y5F0 798 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 PALM3A6NDB9 673 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 UBE2Q2LH0YL09 131 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 TRAF5O00463 557 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ZEB2O60315 1214 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 GADD45BO75293 160 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 GRIK5Q16478 980 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 USP17L6PQ6QN14 398 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 KRBA2Q6ZNG9 492 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 CHST13Q8NET6 341 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 MMP19Q99542 508 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 FAM198AQ9UFP1 575 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ZHX1Q9UKY1 873 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 AK9Q5TCS8 1911 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ITGB4P16144 1822 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 INPP5BP32019 993 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 NLRP12P59046 1061 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 SPA17Q15506 151 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 HSP90B2PQ58FF3 399 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 IQCEQ6IPM2 695 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 ZKSCAN4Q969J2 545 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-211ENST00000413186 KIAA1683Q9H0B3 1180 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 CSRNP2Q9H175 543 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 PAXBP1Q9Y5B6 917 aa9.47□□□□□ -0.89
SYNE1-211ENST00000413186 NHSQ6T4R5 1651 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 UQCRHLA0A096LP55 91 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 UQCRHP07919 91 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 JAK3P52333 1124 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 KCNV1Q6PIU1 500 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 DYMQ7RTS9 669 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 FMNL3Q8IVF7 1028 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 AGXT2Q9BYV1 514 aa9.46□□□□□ -0.89
SYNE1-211ENST00000413186 SCAF8Q9UPN6 1271 aaKnown RBP9.46□□□□□ -0.89
SYNE1-211ENST00000413186 PSAPP07602 524 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 EPB41P11171 864 aaKnown RBP9.46□□□□□ -0.9
SYNE1-211ENST00000413186 EVCP57679 992 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 NEK9Q8TD19 979 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 SEPT8Q92599 483 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 UIMC1Q96RL1 719 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 PCDHB6Q9Y5E3 794 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 C5P01031 1676 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 CNTNAP5Q8WYK1 1306 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 ZC3H4Q9UPT8 1303 aaKnown RBP9.46□□□□□ -0.9
SYNE1-211ENST00000413186 ABCD1P33897 745 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 KRT76Q01546 638 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 PAK1Q13153 545 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 NEDD9Q14511 834 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 PPP2R5AQ15172 486 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 MAP1SQ66K74 1059 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-211ENST00000413186 ZBTB8OSQ8IWT0 167 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 CLIC6Q96NY7 704 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 JMJD4Q9H9V9 463 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 KIAA1468Q9P260 1216 aa9.46□□□□□ -0.9
SYNE1-211ENST00000413186 GCLCP48506 637 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-211ENST00000413186 MTMR1Q13613 665 aa9.45□□□□□ -0.9
SYNE1-211ENST00000413186 ZNF579Q8NAF0 562 aaKnown RBP9.45□□□□□ -0.9
SYNE1-211ENST00000413186 GOLGA5Q8TBA6 731 aa9.45□□□□□ -0.9
SYNE1-211ENST00000413186 ACER1Q8TDN7 264 aa9.45□□□□□ -0.9
SYNE1-211ENST00000413186 LARP4BQ92615 738 aaKnown RBP9.45□□□□□ -0.9
SYNE1-211ENST00000413186 SPAG5Q96R06 1193 aa9.45□□□□□ -0.9
SYNE1-211ENST00000413186 MRPL44Q9H9J2 332 aaKnown RBP9.45□□□□□ -0.9
SYNE1-211ENST00000413186 KIAA1024Q9UPX6 916 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms