RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 CUL5Q93034 780 aa23.36■■□□□ 1.33
PTCD3-202ENST00000409326 ZHX1Q9UKY1 873 aaPredicted RBP23.36■■□□□ 1.33
PTCD3-202ENST00000409326 DDX49Q9Y6V7 483 aaKnown RBP23.36■■□□□ 1.33
PTCD3-202ENST00000409326 STK36Q9NRP7 1315 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 MEIS2O14770 477 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 MSCO60682 206 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 DEXIO95424 95 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 CTDNEP1O95476 244 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 ACVR2BQ13705 512 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 ARHGEF16Q5VV41 709 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 USP17L6PQ6QN14 398 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 TEX2Q8IWB9 1127 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 SMARCC2Q8TAQ2 1214 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 ZSCAN31Q96LW9 406 aaPredicted RBP23.35■■□□□ 1.33
PTCD3-202ENST00000409326 PXMP2Q9NR77 195 aa23.35■■□□□ 1.33
PTCD3-202ENST00000409326 DDX20Q9UHI6 824 aaKnown RBP23.35■■□□□ 1.33
PTCD3-202ENST00000409326 SGPL1O95470 568 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 ST3GAL1Q11201 340 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 FCHSD1Q86WN1 690 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 CCDC12Q8WUD4 166 aaPredicted RBP23.34■■□□□ 1.33
PTCD3-202ENST00000409326 IWS1Q96ST2 819 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 CRISPLD2Q9H0B8 497 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 VTA1Q9NP79 307 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 RIC8AQ9NPQ8 531 aa23.34■■□□□ 1.33
PTCD3-202ENST00000409326 SH2B1Q9NRF2 756 aaPredicted RBP23.34■■□□□ 1.33
PTCD3-202ENST00000409326 FRMPD4Q14CM0 1322 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 ESYT2A0FGR8 921 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 AKR1A1P14550 325 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 CAPN2P17655 700 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 EIF2AK2P19525 551 aaKnown RBP23.33■■□□□ 1.33
PTCD3-202ENST00000409326 ADCY7P51828 1080 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 PDE4DQ08499 809 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 LHX8Q68G74 356 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 SHISA4Q96DD7 197 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 GLT8D2Q9H1C3 349 aa23.33■■□□□ 1.33
PTCD3-202ENST00000409326 SMCO2A6NFE2 343 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 CAPN15O75808 1086 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 UBE2SQ16763 222 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 FBXO16Q8IX29 292 aaPredicted RBP23.32■■□□□ 1.32
PTCD3-202ENST00000409326 CCDC148Q8NFR7 591 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 PDCD2LQ9BRP1 358 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 ZMYND12Q9H0C1 365 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 SH3GLB2Q9NR46 395 aa23.32■■□□□ 1.32
PTCD3-202ENST00000409326 EN2P19622 333 aaPredicted RBP23.31■■□□□ 1.32
PTCD3-202ENST00000409326 MCM2P49736 904 aa23.31■■□□□ 1.32
PTCD3-202ENST00000409326 PGM5Q15124 567 aa23.31■■□□□ 1.32
PTCD3-202ENST00000409326 CCDC144BQ3MJ40 725 aa23.31■■□□□ 1.32
PTCD3-202ENST00000409326 EEPD1Q7L9B9 569 aa23.31■■□□□ 1.32
PTCD3-202ENST00000409326 NSUN7Q8NE18 718 aaKnown RBP23.31■■□□□ 1.32
PTCD3-202ENST00000409326 VPS54Q9P1Q0 977 aa23.31■■□□□ 1.32
PTCD3-202ENST00000409326 FAM184BQ9ULE4 1060 aa23.31■■□□□ 1.32
PTCD3-202ENST00000409326 CD2BP2O95400 341 aaKnown RBP23.3■■□□□ 1.32
PTCD3-202ENST00000409326 NR3C2P08235 984 aa23.3■■□□□ 1.32
PTCD3-202ENST00000409326 STXBP2Q15833 593 aa23.3■■□□□ 1.32
PTCD3-202ENST00000409326 TAPT1Q6NXT6 567 aa23.3■■□□□ 1.32
PTCD3-202ENST00000409326 CCDC83Q8IWF9 413 aa23.3■■□□□ 1.32
PTCD3-202ENST00000409326 OGDHLQ9ULD0 1010 aa23.3■■□□□ 1.32
PTCD3-202ENST00000409326 SPDYE3A6NKU9 549 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 TFRCP02786 760 aaKnown RBP23.29■■□□□ 1.32
PTCD3-202ENST00000409326 RARBP10826 455 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 GNA11P29992 359 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 CLK2P49760 499 aaKnown RBP23.29■■□□□ 1.32
PTCD3-202ENST00000409326 ANO1Q5XXA6 986 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 FAM177A1Q8N128 213 aaPredicted RBP23.29■■□□□ 1.32
PTCD3-202ENST00000409326 AIFM3Q96NN9 605 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 C6orf50Q9HD87 102 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 ORC3Q9UBD5 711 aaPredicted RBP23.29■■□□□ 1.32
PTCD3-202ENST00000409326 MKI67P46013 3256 aaKnown RBP23.29■■□□□ 1.32
PTCD3-202ENST00000409326 MYH7BA7E2Y1 1941 aa23.29■■□□□ 1.32
PTCD3-202ENST00000409326 VSIG10LQ86VR7 867 aa23.28■■□□□ 1.32
PTCD3-202ENST00000409326 IL31RAQ8NI17 732 aa23.28■■□□□ 1.32
PTCD3-202ENST00000409326 LLPHQ9BRT6 129 aaKnown RBP23.28■■□□□ 1.32
PTCD3-202ENST00000409326 PDGFCQ9NRA1 345 aa23.28■■□□□ 1.32
PTCD3-202ENST00000409326 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.27■■□□□ 1.32
PTCD3-202ENST00000409326 RBM47A0AV96 593 aaKnown RBP23.27■■□□□ 1.32
PTCD3-202ENST00000409326 ADCY6O43306 1168 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 JAK2O60674 1132 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 DTNBO60941 627 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 EIF3JO75822 258 aaKnown RBP23.27■■□□□ 1.32
PTCD3-202ENST00000409326 FDPSP14324 419 aaKnown RBP23.27■■□□□ 1.32
PTCD3-202ENST00000409326 CCND2P30279 289 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 ADCYAP1R1P41586 468 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 AP3B2Q13367 1082 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 IQSEC1Q6DN90 963 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 ANKLE1Q8NAG6 615 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 WASF1Q92558 559 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 LENG1Q96BZ8 264 aaPredicted RBP23.27■■□□□ 1.32
PTCD3-202ENST00000409326 PCDHA6Q9UN73 950 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 PCDHA8Q9Y5H6 950 aa23.27■■□□□ 1.32
PTCD3-202ENST00000409326 DUSP11O75319 330 aaKnown RBP23.26■■□□□ 1.31
PTCD3-202ENST00000409326 FOSP01100 380 aaPredicted RBP23.26■■□□□ 1.31
PTCD3-202ENST00000409326 MYCLP12524 364 aaPredicted RBP23.26■■□□□ 1.31
PTCD3-202ENST00000409326 TNFAIP2Q03169 654 aa23.26■■□□□ 1.31
PTCD3-202ENST00000409326 BICD2Q8TD16 824 aa23.26■■□□□ 1.31
PTCD3-202ENST00000409326 SCFD2Q8WU76 684 aa23.26■■□□□ 1.31
PTCD3-202ENST00000409326 EHMT1Q9H9B1 1298 aa23.26■■□□□ 1.31
PTCD3-202ENST00000409326 XPNPEP3Q9NQH7 507 aa23.26■■□□□ 1.31
PTCD3-202ENST00000409326 NLRP5P59047 1200 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 PCNX4Q63HM2 1172 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 MCTP2Q6DN12 878 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms