RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ATL3Q6DD88 541 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 NSUN6Q8TEA1 469 aaKnown RBP20.58■□□□□ 0.88
SDC1-203ENST00000403076 ADD3Q9UEY8 706 aaKnown RBP20.58■□□□□ 0.88
SDC1-203ENST00000403076 CFAP45Q9UL16 551 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 RBBP6Q7Z6E9 1792 aaKnown RBP20.57■□□□□ 0.88
SDC1-203ENST00000403076 NBR1Q14596 966 aa20.57■□□□□ 0.88
SDC1-203ENST00000403076 KIF22Q14807 665 aa20.57■□□□□ 0.88
SDC1-203ENST00000403076 ZNF174Q15697 407 aa20.57■□□□□ 0.88
SDC1-203ENST00000403076 ABRAQ8N0Z2 381 aa20.57■□□□□ 0.88
SDC1-203ENST00000403076 USP28Q96RU2 1077 aa20.57■□□□□ 0.88
SDC1-203ENST00000403076 SLC15A5A6NIM6 579 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 TNPO2O14787 897 aaKnown RBP20.56■□□□□ 0.88
SDC1-203ENST00000403076 CCNT1O60563 726 aaKnown RBP20.56■□□□□ 0.88
SDC1-203ENST00000403076 ADORA2AP29274 412 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 USP11P51784 963 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 SP3Q02447 781 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 DPP9Q86TI2 863 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 DNERQ8NFT8 737 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 GBP4Q96PP9 640 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 NAP1L4Q99733 375 aaKnown RBP20.56■□□□□ 0.88
SDC1-203ENST00000403076 PXMP2Q9NR77 195 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 PCDHB6Q9Y5E3 794 aa20.56■□□□□ 0.88
SDC1-203ENST00000403076 THSD7BQ9C0I4 1608 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 B4DLN1 442 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 BAG4O95429 457 aaKnown RBP20.55■□□□□ 0.88
SDC1-203ENST00000403076 MYCLP12524 364 aaPredicted RBP20.55■□□□□ 0.88
SDC1-203ENST00000403076 MCM7P33993 719 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 FCGRTP55899 365 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 ANO1Q5XXA6 986 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 FAM133AQ8N9E0 248 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 FTOQ9C0B1 505 aaKnown RBP eCLIP20.55■□□□□ 0.88
SDC1-203ENST00000403076 SAGE1Q9NXZ1 904 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 CNPY2Q9Y2B0 182 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 CLIC4Q9Y696 253 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 RPTORQ8N122 1335 aa20.55■□□□□ 0.88
SDC1-203ENST00000403076 PSMC4P43686 418 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 LACTBP83111 547 aaPredicted RBP20.54■□□□□ 0.88
SDC1-203ENST00000403076 GRB14Q14449 540 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 PGM5Q15124 567 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 STK38Q15208 465 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 SF3A1Q15459 793 aaKnown RBP20.54■□□□□ 0.88
SDC1-203ENST00000403076 MPHOSPH6Q99547 160 aaKnown RBP20.54■□□□□ 0.88
SDC1-203ENST00000403076 PDCD2LQ9BRP1 358 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 SLC5A4Q9NY91 659 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 CEP131Q9UPN4 1083 aa20.54■□□□□ 0.88
SDC1-203ENST00000403076 DNAJC25-GNG10A0A024R161 153 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 SOWAHBA6NEL2 793 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 GPR25O00155 361 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 FIBPO43427 364 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 NR3C2P08235 984 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 CYP3A4P08684 503 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 CCND2P30279 289 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 NUDT12Q9BQG2 462 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.53■□□□□ 0.88
SDC1-203ENST00000403076 POLR3EQ9NVU0 708 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 RTEL1Q9NZ71 1219 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 WNT7AO00755 349 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 COBLO75128 1261 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 TDP2O95551 362 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 GCFC2P16383 781 aaKnown RBP20.53■□□□□ 0.88
SDC1-203ENST00000403076 ALDH5A1P51649 535 aaPredicted RBP20.53■□□□□ 0.88
SDC1-203ENST00000403076 PCNX4Q63HM2 1172 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 IL31RAQ8NI17 732 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 CRYGNQ8WXF5 182 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 ZFP91Q96JP5 570 aaPredicted RBP20.53■□□□□ 0.88
SDC1-203ENST00000403076 SPATA32Q96LK8 384 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 IWS1Q96ST2 819 aa20.53■□□□□ 0.88
SDC1-203ENST00000403076 SCAND2PQ9GZW5 306 aaPredicted RBP20.53■□□□□ 0.88
SDC1-203ENST00000403076 BMP15O95972 392 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 PDE4DQ08499 809 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 PPP4R3AQ6IN85 833 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 XRRA1Q6P2D8 792 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 DNAJC5GQ8N7S2 189 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 ARHGAP39Q9C0H5 1083 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 GDPD2Q9HCC8 539 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 DDX25Q9UHL0 483 aaKnown RBP20.52■□□□□ 0.87
SDC1-203ENST00000403076 FRMPD4Q14CM0 1322 aa20.52■□□□□ 0.87
SDC1-203ENST00000403076 PLXNB2O15031 1838 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 MYH7BA7E2Y1 1941 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 EDIL3O43854 480 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 MARCH6O60337 910 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 NASPP49321 788 aaPredicted RBP20.51■□□□□ 0.87
SDC1-203ENST00000403076 MAP2K5Q13163 448 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 ORC2Q13416 577 aaPredicted RBP20.51■□□□□ 0.87
SDC1-203ENST00000403076 ZNF792Q3KQV3 632 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 PRR16Q569H4 304 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 MORN1Q5T089 497 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 MOXD1Q6UVY6 613 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 CLEC17AQ6ZS10 378 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 VSIG10LQ86VR7 867 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 TRIM47Q96LD4 638 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 TSKSQ9UJT2 592 aa20.51■□□□□ 0.87
SDC1-203ENST00000403076 ZNFX1Q9P2E3 1918 aaKnown RBP20.51■□□□□ 0.87
SDC1-203ENST00000403076 CYP3A7-CYP3A51PA0A087WV96 503 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 ASB14A6NK59 587 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 NEMFO60524 1076 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 FKTNO75072 461 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 YEATS4O95619 227 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 CYP3A7P24462 503 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 CTGFP29279 349 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 322.6 ms