RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 SYNPO2Q9UMS6 1093 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 SLC4A4Q9Y6R1 1079 aa11.25□□□□□ -0.61
NEDD9-203ENST00000397378 DDX49Q9Y6V7 483 aaKnown RBP11.25□□□□□ -0.61
NEDD9-203ENST00000397378 CCER2I3L3R5 266 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 CPT1AP50416 773 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 CHMP4BP1P59074 171 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 GPM6BQ13491 265 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 EPC2Q52LR7 807 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 KIAA1211Q6ZU35 1233 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 CCDC155Q8N6L0 562 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 FAM133AQ8N9E0 248 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 MKL1Q969V6 931 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 KIFC2Q96AC6 838 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 HAUS7Q99871 368 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 BOLA2Q9H3K6 86 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 FEM1BQ9UK73 627 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 COG6Q9Y2V7 657 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 INSL6Q9Y581 213 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 SCN10AQ9Y5Y9 1956 aa11.24□□□□□ -0.61
NEDD9-203ENST00000397378 NLRC5Q86WI3 1866 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 IGKV6D-41A0A0C4DH26 115 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 ABHD14A-ACY1A0A1B0GW23 586 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 NCK2O43639 380 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 EFCAB14O75071 495 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 CHGBP05060 677 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 LTBRP36941 435 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 DLX2Q07687 328 aaPredicted RBP11.23□□□□□ -0.61
NEDD9-203ENST00000397378 SIGLEC14Q08ET2 396 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 MKRN4PQ13434 485 aaPredicted RBP11.23□□□□□ -0.61
NEDD9-203ENST00000397378 SMAD4Q13485 552 aaKnown RBP11.23□□□□□ -0.61
NEDD9-203ENST00000397378 COL19A1Q14993 1142 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 TAPT1Q6NXT6 567 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 NFRKBQ6P4R8 1299 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 GIMAP6Q6P9H5 292 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 LRRC8DQ7L1W4 858 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 RPAP2Q8IXW5 612 aaPredicted RBP11.23□□□□□ -0.61
NEDD9-203ENST00000397378 AFAP1L1Q8TED9 768 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 SAMD11Q96NU1 681 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 PUS7LQ9H0K6 701 aaKnown RBP11.23□□□□□ -0.61
NEDD9-203ENST00000397378 ACAD9Q9H845 621 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 MKNK2Q9HBH9 465 aa11.23□□□□□ -0.61
NEDD9-203ENST00000397378 H3BNC9 293 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 RAB11FIP3O75154 756 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 IKBKEQ14164 716 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 ATG2AQ2TAZ0 1938 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 ZSCAN25Q6NSZ9 544 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 ADSSL1Q8N142 457 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 GMCL1P1Q8NEA9 526 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 OR6J1Q8NGC5 347 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 CAGE1Q8TC20 777 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 NKD2Q969F2 451 aaPredicted RBP11.22□□□□□ -0.61
NEDD9-203ENST00000397378 STRBPQ96SI9 672 aaKnown RBP11.22□□□□□ -0.61
NEDD9-203ENST00000397378 A1CFQ9NQ94 594 aaKnown RBP11.22□□□□□ -0.61
NEDD9-203ENST00000397378 CLIP2Q9UDT6 1046 aa11.22□□□□□ -0.61
NEDD9-203ENST00000397378 HMMRO75330 724 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 SELPP16109 830 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 NBL1P41271 181 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 PTPN11Q06124 597 aaPredicted RBP11.21□□□□□ -0.61
NEDD9-203ENST00000397378 GPNMBQ14956 572 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 PTGISQ16647 500 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 TCTN1Q2MV58 587 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 TKFCQ3LXA3 575 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 DUSP28Q4G0W2 176 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 BRDTQ58F21 947 aaPredicted RBP11.21□□□□□ -0.61
NEDD9-203ENST00000397378 DGLUCYQ7Z3D6 616 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 MYOCDQ8IZQ8 938 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 CEP95Q96GE4 821 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 CNTNAP3BQ96NU0 1288 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 CNTNAP3Q9BZ76 1288 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 ZNF287Q9HBT7 754 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 VTA1Q9NP79 307 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 MTMR4Q9NYA4 1195 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 CD207Q9UJ71 328 aa11.21□□□□□ -0.61
NEDD9-203ENST00000397378 CACNA1HO95180 2353 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 PLIN4Q96Q06 1357 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 RAD50Q92878 1312 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 GSG1L2A8MUP6 293 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 GALR2O43603 387 aaPredicted RBP11.2□□□□□ -0.62
NEDD9-203ENST00000397378 NBNO60934 754 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 TBX10O75333 385 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 CSPG5O95196 566 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 PARNO95453 639 aaKnown RBP11.2□□□□□ -0.62
NEDD9-203ENST00000397378 TTLL1O95922 423 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 BMP3P12645 472 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 CTC1Q2NKJ3 1217 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.2□□□□□ -0.62
NEDD9-203ENST00000397378 SIRT2Q8IXJ6 389 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 ZNF444Q8N0Y2 327 aaPredicted RBP11.2□□□□□ -0.62
NEDD9-203ENST00000397378 ASIC4Q96FT7 647 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 WDR11Q9BZH6 1224 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 IGFLR1Q9H665 355 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 RNF146Q9NTX7 359 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 FAM186AA6NE01 2351 aa11.2□□□□□ -0.62
NEDD9-203ENST00000397378 MICAL3Q7RTP6 2002 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 RALGAPA2Q2PPJ7 1873 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 MINDY4BA8MYZ0 360 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 RBAK-RBAKDNI3L0D1 243 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 PLA2G6O60733 806 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 CXCL10P02778 98 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 AMHP03971 560 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms