RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DNM1LO00429 736 aa25.02■■□□□ 1.6
CLN3-207ENST00000395653 DUSP11O75319 330 aaKnown RBP25.02■■□□□ 1.6
CLN3-207ENST00000395653 NEK4P51957 841 aa25.02■■□□□ 1.6
CLN3-207ENST00000395653 DIS3LQ8TF46 1054 aaKnown RBP25.02■■□□□ 1.6
CLN3-207ENST00000395653 CUL5Q93034 780 aa25.02■■□□□ 1.6
CLN3-207ENST00000395653 RNF26Q9BY78 433 aaPredicted RBP25.02■■□□□ 1.6
CLN3-207ENST00000395653 UPF2Q9HAU5 1272 aaKnown RBP25.02■■□□□ 1.6
CLN3-207ENST00000395653 ADCY6O43306 1168 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 PRPF3O43395 683 aaKnown RBP25.01■■□□□ 1.59
CLN3-207ENST00000395653 EIF2AK2P19525 551 aaKnown RBP25.01■■□□□ 1.59
CLN3-207ENST00000395653 ADCYAP1R1P41586 468 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 PFKFB3Q16875 520 aaPredicted RBP25.01■■□□□ 1.59
CLN3-207ENST00000395653 IQSEC1Q6DN90 963 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 TEX2Q8IWB9 1127 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 LENG1Q96BZ8 264 aaPredicted RBP25.01■■□□□ 1.59
CLN3-207ENST00000395653 PSTPIP2Q9H939 334 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 BARHL2Q9NY43 387 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 TPCN1Q9ULQ1 816 aa25.01■■□□□ 1.59
CLN3-207ENST00000395653 MEIS2O14770 477 aa25■■□□□ 1.59
CLN3-207ENST00000395653 TNFAIP2Q03169 654 aa25■■□□□ 1.59
CLN3-207ENST00000395653 PHKBQ93100 1093 aa25■■□□□ 1.59
CLN3-207ENST00000395653 PDCD2LQ9BRP1 358 aa25■■□□□ 1.59
CLN3-207ENST00000395653 PDGFCQ9NRA1 345 aa25■■□□□ 1.59
CLN3-207ENST00000395653 SYNRGQ9UMZ2 1314 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.99■■□□□ 1.59
CLN3-207ENST00000395653 RBM47A0AV96 593 aaKnown RBP24.99■■□□□ 1.59
CLN3-207ENST00000395653 TNRC18O15417 2968 aaPredicted RBP24.99■■□□□ 1.59
CLN3-207ENST00000395653 ADAMTS4O75173 837 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 NR3C2P08235 984 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 COL6A1P12109 1028 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 SCG2P13521 617 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 NAPAP54920 295 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 AKAP17AQ02040 695 aaKnown RBP24.99■■□□□ 1.59
CLN3-207ENST00000395653 STK3Q13188 491 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 LRRC41Q15345 812 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 STXBP2Q15833 593 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 USP17L6PQ6QN14 398 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 FCHSD1Q86WN1 690 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 SMARCC2Q8TAQ2 1214 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 KIF2CQ99661 725 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 C11orf49Q9H6J7 331 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 FRMPD4Q14CM0 1322 aa24.99■■□□□ 1.59
CLN3-207ENST00000395653 STXBP3O00186 592 aa24.98■■□□□ 1.59
CLN3-207ENST00000395653 CPLX1O14810 134 aa24.98■■□□□ 1.59
CLN3-207ENST00000395653 PFKFB2O60825 505 aa24.98■■□□□ 1.59
CLN3-207ENST00000395653 PGK1P00558 417 aa24.98■■□□□ 1.59
CLN3-207ENST00000395653 GJC2Q5T442 439 aaPredicted RBP24.98■■□□□ 1.59
CLN3-207ENST00000395653 TYW1BQ6NUM6 668 aa24.98■■□□□ 1.59
CLN3-207ENST00000395653 CPLX2Q6PUV4 134 aaKnown RBP24.98■■□□□ 1.59
CLN3-207ENST00000395653 RNF180Q86T96 592 aa24.98■■□□□ 1.59
CLN3-207ENST00000395653 SLKQ9H2G2 1235 aaPredicted RBP24.98■■□□□ 1.59
CLN3-207ENST00000395653 GNEQ9Y223 722 aaKnown RBP24.98■■□□□ 1.59
CLN3-207ENST00000395653 KBTBD13C9JR72 458 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 SMPD1P17405 629 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 PGM5Q15124 567 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 PKN1Q16512 942 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 SCFD2Q8WU76 684 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 HTATIP2Q9BUP3 242 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 SLC26A6Q9BXS9 759 aa24.97■■□□□ 1.59
CLN3-207ENST00000395653 UPF3AQ9H1J1 476 aaKnown RBP24.97■■□□□ 1.59
CLN3-207ENST00000395653 EIF3JO75822 258 aaKnown RBP24.96■■□□□ 1.59
CLN3-207ENST00000395653 GJA9P57773 515 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 SCRN1Q12765 414 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 DUSP28Q4G0W2 176 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 VSIG10LQ86VR7 867 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 TRIM22Q8IYM9 498 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 WDR11Q9BZH6 1224 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 SPC25Q9HBM1 224 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 RIC8AQ9NPQ8 531 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 Q9Y3F1 56 aa24.96■■□□□ 1.59
CLN3-207ENST00000395653 MYCNP04198 464 aaPredicted RBP24.95■■□□□ 1.59
CLN3-207ENST00000395653 CST5P28325 142 aaPredicted RBP24.95■■□□□ 1.59
CLN3-207ENST00000395653 NKX3-2P78367 333 aa24.95■■□□□ 1.59
CLN3-207ENST00000395653 NOL8Q76FK4 1167 aaKnown RBP24.95■■□□□ 1.59
CLN3-207ENST00000395653 KLHDC9Q8NEP7 349 aa24.95■■□□□ 1.59
CLN3-207ENST00000395653 CCDC12Q8WUD4 166 aaPredicted RBP24.95■■□□□ 1.59
CLN3-207ENST00000395653 GLT8D2Q9H1C3 349 aa24.95■■□□□ 1.59
CLN3-207ENST00000395653 CCND2P30279 289 aa24.95■■□□□ 1.58
CLN3-207ENST00000395653 SSRP1Q08945 709 aaKnown RBP24.95■■□□□ 1.58
CLN3-207ENST00000395653 TLK2Q86UE8 772 aa24.95■■□□□ 1.58
CLN3-207ENST00000395653 IL31RAQ8NI17 732 aa24.95■■□□□ 1.58
CLN3-207ENST00000395653 ESYT2A0FGR8 921 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 SMCO2A6NFE2 343 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 NKRFO15226 690 aaKnown RBP eCLIP24.94■■□□□ 1.58
CLN3-207ENST00000395653 PPFIA3O75145 1194 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 CDKL5O76039 1030 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 C6orf222P0C671 652 aaPredicted RBP24.94■■□□□ 1.58
CLN3-207ENST00000395653 MYCLP12524 364 aaPredicted RBP24.94■■□□□ 1.58
CLN3-207ENST00000395653 ADCY7P51828 1080 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 TTLL4Q14679 1199 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 TSEN34Q9BSV6 310 aaKnown RBP24.94■■□□□ 1.58
CLN3-207ENST00000395653 PHF24Q9UPV7 400 aa24.94■■□□□ 1.58
CLN3-207ENST00000395653 SPDYE3A6NKU9 549 aa24.93■■□□□ 1.58
CLN3-207ENST00000395653 DEXIO95424 95 aa24.93■■□□□ 1.58
CLN3-207ENST00000395653 UBE2SQ16763 222 aa24.93■■□□□ 1.58
CLN3-207ENST00000395653 ME3Q16798 604 aa24.93■■□□□ 1.58
CLN3-207ENST00000395653 TMEM63BQ5T3F8 832 aa24.93■■□□□ 1.58
CLN3-207ENST00000395653 AP5M1Q9H0R1 490 aa24.93■■□□□ 1.58
CLN3-207ENST00000395653 MYADML2A6NDP7 307 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 CTAGE5O15320 804 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms