RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 COBLL1Q53SF7 1204 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 KIAA1328Q86T90 577 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 ZBTB9Q96C00 473 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 NUDT12Q9BQG2 462 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 NUP58Q9BVL2 599 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 SERPINB2P05120 415 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 RBM17Q96I25 401 aaKnown RBP21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 ERGIC2Q96RQ1 377 aa21.77■■□□□ 1.08
SHROOM1-202ENST00000378676 MYH10P35580 1976 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 SRGAP2O75044 1071 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 FXR2P51116 673 aaKnown RBP eCLIP21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 CENPPQ6IPU0 288 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 SV2BQ7L1I2 683 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 DYMQ7RTS9 669 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 RETREG2Q8NC44 543 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 GPCPD1Q9NPB8 672 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 CYLC1P35663 651 aaPredicted RBP21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 PPP1R2P41236 205 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 GYS2P54840 703 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 KRT83P78385 493 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 GABPAQ06546 454 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 DPP8Q6V1X1 898 aaPredicted RBP21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 KCNK18Q7Z418 384 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 DDX4Q9NQI0 724 aaKnown RBP21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 L1RE1Q9UN81 338 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 ANKRD31Q8N7Z5 1873 aa21.76■■□□□ 1.07
SHROOM1-202ENST00000378676 IGKV6D-41A0A0C4DH26 115 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 EIF3CLB5ME19 914 aaKnown RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 ZNF662Q6ZS27 426 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 UNC13DQ70J99 1090 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 SLF2Q8IX21 1173 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 LARP4BQ92615 738 aaKnown RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 EIF3CQ99613 913 aaKnown RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 STK17AQ9UEE5 414 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 C6orf229H3BNL8 230 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 hCG_1984214I3L0E3 225 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 EPHB6O15197 1021 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 PPP1R11O60927 126 aaPredicted RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 PLEKP08567 350 aaPredicted RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 SNHG28P0DPA3 235 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 TUBB4BP68371 445 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 GTF2IP78347 998 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 CYP27A1Q02318 531 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 UBE2SQ16763 222 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 ASPRV1Q53RT3 343 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 ZNF713Q8N859 430 aaPredicted RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 TBC1D22AQ8WUA7 517 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 MMS19Q96T76 1030 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 RNF216Q9NWF9 866 aaPredicted RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 ZNHIT6Q9NWK9 470 aaKnown RBP21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 DUSP10Q9Y6W6 482 aa21.75■■□□□ 1.07
SHROOM1-202ENST00000378676 ZNF263O14978 683 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 ERLIN1O75477 346 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 FIGNQ5HY92 759 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 NEK11Q8NG66 645 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 PDE11AQ9HCR9 933 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 TMEM51Q9NW97 253 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 A0A1W2PQJ5 194 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 F8W031 263 aaPredicted RBP21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 TNNI2P48788 182 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 PAPD7Q5XG87 772 aaKnown RBP21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 HDXQ7Z353 690 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 GLIS3Q8NEA6 775 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 SIK3Q9Y2K2 1263 aa21.74■■□□□ 1.07
SHROOM1-202ENST00000378676 KRT86O43790 486 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 TMEM266Q2M3C6 531 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 FKBP15Q5T1M5 1219 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 CCDC170Q8IYT3 715 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 SNX29Q8TEQ0 813 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 RAD54LQ92698 747 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 CDK5RAP3Q96JB5 506 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 CAPZA3Q96KX2 299 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 SAR1BQ9Y6B6 198 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 ADRA2BP18089 450 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 DDR1Q08345 913 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 KRT26Q7Z3Y9 468 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 GJA10Q969M2 543 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 PURBQ96QR8 312 aaKnown RBP21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 JMJD4Q9H9V9 463 aa21.73■■□□□ 1.07
SHROOM1-202ENST00000378676 PVALEFA0A1B0GWK0 134 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 RIMBP2O15034 1052 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 ECM1Q16610 540 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 VWA3BQ502W6 1294 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 TTBK2Q6IQ55 1244 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 GPIHBP1Q8IV16 184 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 SIPA1L1O43166 1804 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 BBOX1O75936 387 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 TMEM119Q4V9L6 283 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 ADGRF4Q8IZF3 695 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 CERS5Q8N5B7 392 aa21.72■■□□□ 1.07
SHROOM1-202ENST00000378676 CCDC66A2RUB6 948 aa21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 IDEP14735 1019 aa21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 CDK17Q00537 523 aa21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 ZNF543Q08ER8 600 aa21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 GUF1Q8N442 669 aaKnown RBP21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 NDST4Q9H3R1 872 aa21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 FAM207AQ9NSI2 230 aaPredicted RBP21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 BRWD3Q6RI45 1802 aa21.71■■□□□ 1.07
SHROOM1-202ENST00000378676 MACROD2A1Z1Q3 448 aa21.7■■□□□ 1.07
SHROOM1-202ENST00000378676 N4BP1O75113 896 aaKnown RBP21.7■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms