RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 OSBPL10Q9BXB5 764 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 TXLNGQ9NUQ3 528 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 CDK12Q9NYV4 1490 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 GSTA1P08263 222 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 SKOR1P84550 965 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 TTLL7Q6ZT98 887 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 UNC5CLQ8IV45 518 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 LRRC59Q96AG4 307 aaKnown RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 SLC26A6Q9BXS9 759 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 LSG1Q9H089 658 aaKnown RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 BTBD7Q9P203 1132 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 BARX2Q9UMQ3 279 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 SPHKAPQ2M3C7 1700 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 NUTM2BA6NNL0 878 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 NUTM2EB1AL46 878 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 HNRNPRO43390 633 aaKnown RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 ADCY3O60266 1144 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 LGR5O75473 907 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 EIF4A1P60842 406 aaKnown RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 SCINQ9Y6U3 715 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 NEO1Q92859 1461 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 SOWAHDA6NJG2 315 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 LCA5LO95447 670 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 IGHMBP2P38935 993 aaKnown RBP12.84□□□□□ -0.35
NPHP4-202ENST00000378161 KRT28Q7Z3Y7 464 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 SAMD3Q8N6K7 520 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 MAK16Q9BXY0 300 aaKnown RBP12.84□□□□□ -0.35
NPHP4-202ENST00000378161 CD2APQ9Y5K6 639 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 MINDY4BA8MYZ0 360 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 NVLO15381 856 aaKnown RBP12.84□□□□□ -0.35
NPHP4-202ENST00000378161 PTH1RQ03431 593 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 SPAG1Q07617 926 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 VPS52Q8N1B4 723 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 CHMP6Q96FZ7 201 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 ACSBG1Q96GR2 724 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 SYNCQ9H7C4 482 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 RTEL1Q9NZ71 1219 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 TMEM110-MUSTN1A8MSY1 372 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 NQO1P15559 274 aaKnown RBP12.84□□□□□ -0.35
NPHP4-202ENST00000378161 USP46P62068 366 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 MYBPC3Q14896 1274 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 IL17REQ8NFR9 667 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 RPS6KC1Q96S38 1066 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 PYM1Q9BRP8 204 aaKnown RBP12.84□□□□□ -0.35
NPHP4-202ENST00000378161 INTS9Q9NV88 658 aaKnown RBP12.84□□□□□ -0.35
NPHP4-202ENST00000378161 WDR35Q9P2L0 1181 aa12.84□□□□□ -0.35
NPHP4-202ENST00000378161 SH3BP5O60239 455 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 ATP1A3P13637 1013 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 STAT6P42226 847 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 BASP1P80723 227 aaKnown RBP12.83□□□□□ -0.35
NPHP4-202ENST00000378161 TNNI3KQ59H18 835 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 ARHGAP24Q8N264 748 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 MKL1Q969V6 931 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 DHRS1Q96LJ7 313 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 PANX2Q96RD6 677 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 SYNPO2Q9UMS6 1093 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 FPGT-TNNI3KV9GXZ4 949 aa12.83□□□□□ -0.35
NPHP4-202ENST00000378161 ARAP3Q8WWN8 1544 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 UBN2Q6ZU65 1347 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 MSL3P1P0C860 447 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 INHBEP58166 350 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 C2orf54Q08AI8 447 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 POSTNQ15063 836 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 ERMNQ8TAM6 284 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 CIB2O75838 187 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 SLC5A1P13866 664 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 PTPN21Q16825 1174 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 CHST3Q7LGC8 479 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 EURLQ9NYK6 297 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 SEL1LQ9UBV2 794 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 CIDEBQ9UHD4 219 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 CDC42BPBQ9Y5S2 1711 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 KRT9P35527 623 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 CACNA2D1P54289 1103 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 XRCC4Q13426 336 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 TRIM14Q14142 442 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 ZMYM1Q5SVZ6 1142 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 MFSD6Q6ZSS7 791 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 CROCCP2Q86T23 111 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 GSDMBQ8TAX9 411 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 MTA3Q9BTC8 594 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 TAF1DQ9H5J8 278 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-202ENST00000378161 LGR6Q9HBX8 967 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 TMOD3Q9NYL9 352 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 C6orf203Q9P0P8 240 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-202ENST00000378161 NOVA2Q9UNW9 492 aaKnown RBP12.83□□□□□ -0.36
NPHP4-202ENST00000378161 PLAAQ9Y263 795 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 PNPLA6Q8IY17 1366 aa12.83□□□□□ -0.36
NPHP4-202ENST00000378161 YEATS2Q9ULM3 1422 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 NDUFB5O43674 189 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 BMP15O95972 392 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 APOEP02649 317 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 EEF2P13639 858 aaKnown RBP12.82□□□□□ -0.36
NPHP4-202ENST00000378161 BIRC3Q13489 604 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 CCDC153Q494R4 210 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 IRGCQ6NXR0 463 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 MAEAQ7L5Y9 396 aa12.82□□□□□ -0.36
NPHP4-202ENST00000378161 KBTBD3Q8NAB2 608 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms