RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MEIS2O14770 477 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 LARGE1O95461 756 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 PGK1P00558 417 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 IFNAR1P17181 557 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 RBM25P49756 843 aaKnown RBP15.4■□□□□ 0.06
VPS28-202ENST00000377348 NAPAP54920 295 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 IRX5P78411 483 aaPredicted RBP15.4■□□□□ 0.06
VPS28-202ENST00000377348 SCRN1Q12765 414 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 PKN1Q16512 942 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 UBE2SQ16763 222 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 GJC2Q5T442 439 aaPredicted RBP15.4■□□□□ 0.06
VPS28-202ENST00000377348 SLC26A6Q9BXS9 759 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 PSTPIP2Q9H939 334 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 VTA1Q9NP79 307 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 XPNPEP3Q9NQH7 507 aa15.4■□□□□ 0.06
VPS28-202ENST00000377348 MAP3K20Q9NYL2 800 aaKnown RBP15.4■□□□□ 0.06
VPS28-202ENST00000377348 LOC102724159A0A0B4J2E5 919 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 STXBP3O00186 592 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 PRPF3O43395 683 aaKnown RBP15.39■□□□□ 0.05
VPS28-202ENST00000377348 PWP2Q15269 919 aaKnown RBP15.39■□□□□ 0.05
VPS28-202ENST00000377348 ANKRD1Q15327 319 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 ME3Q16798 604 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 PFKFB3Q16875 520 aaPredicted RBP15.39■□□□□ 0.05
VPS28-202ENST00000377348 SAMD3Q8N6K7 520 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 ANKLE1Q8NAG6 615 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 IL31RAQ8NI17 732 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 SMARCC2Q8TAQ2 1214 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 CUL5Q93034 780 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 ZFP91Q96JP5 570 aaPredicted RBP15.39■□□□□ 0.05
VPS28-202ENST00000377348 PDCD2LQ9BRP1 358 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 SLKQ9H2G2 1235 aaPredicted RBP15.39■□□□□ 0.05
VPS28-202ENST00000377348 BARHL2Q9NY43 387 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 SYNRGQ9UMZ2 1314 aa15.39■□□□□ 0.05
VPS28-202ENST00000377348 MYADML2A6NDP7 307 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 CPLX1O14810 134 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 PFKFB2O60825 505 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 NR3C2P08235 984 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 SCG2P13521 617 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 SMPD1P17405 629 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 TNFAIP2Q03169 654 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 PGM5Q15124 567 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 LRRC41Q15345 812 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 NECAB1Q8N987 351 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 IWS1Q96ST2 819 aa15.38■□□□□ 0.05
VPS28-202ENST00000377348 MPHOSPH6Q99547 160 aaKnown RBP15.38■□□□□ 0.05
VPS28-202ENST00000377348 RNF26Q9BY78 433 aaPredicted RBP15.38■□□□□ 0.05
VPS28-202ENST00000377348 UPF2Q9HAU5 1272 aaKnown RBP15.38■□□□□ 0.05
VPS28-202ENST00000377348 DNAH12Q6ZR08 3092 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 B4DLN1 442 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 PIK3CDO00329 1044 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 ADAMTS4O75173 837 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 DUSP11O75319 330 aaKnown RBP15.37■□□□□ 0.05
VPS28-202ENST00000377348 ARIH2O95376 493 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 MYCLP12524 364 aaPredicted RBP15.37■□□□□ 0.05
VPS28-202ENST00000377348 CAPN2P17655 700 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 MRPL12P52815 198 aaKnown RBP15.37■□□□□ 0.05
VPS28-202ENST00000377348 AKAP17AQ02040 695 aaKnown RBP15.37■□□□□ 0.05
VPS28-202ENST00000377348 STXBP2Q15833 593 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 PPP1R18Q6NYC8 613 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 SEPT14Q6ZU15 432 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 NECAB2Q7Z6G3 386 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 ARRDC4Q8NCT1 418 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 BACH2Q9BYV9 841 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 WDR11Q9BZH6 1224 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 C11orf49Q9H6J7 331 aa15.37■□□□□ 0.05
VPS28-202ENST00000377348 GNEQ9Y223 722 aaKnown RBP15.37■□□□□ 0.05
VPS28-202ENST00000377348 RBM47A0AV96 593 aaKnown RBP15.36■□□□□ 0.05
VPS28-202ENST00000377348 SMCO2A6NFE2 343 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 hCG_1984214I3L0E3 225 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 DNM1LO00429 736 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 ADAMTS3O15072 1205 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 COL6A1P12109 1028 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 SSRP1Q08945 709 aaKnown RBP15.36■□□□□ 0.05
VPS28-202ENST00000377348 IQSEC1Q6DN90 963 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 TLK2Q86UE8 772 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 ZNF713Q8N859 430 aaPredicted RBP15.36■□□□□ 0.05
VPS28-202ENST00000377348 COPS5Q92905 334 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 PGBD1Q96JS3 809 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 RIC8AQ9NPQ8 531 aa15.36■□□□□ 0.05
VPS28-202ENST00000377348 KBTBD13C9JR72 458 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 CTAGE5O15320 804 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 DYNC1LI2O43237 492 aaPredicted RBP15.35■□□□□ 0.05
VPS28-202ENST00000377348 CTDNEP1O95476 244 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 C6orf222P0C671 652 aaPredicted RBP15.35■□□□□ 0.05
VPS28-202ENST00000377348 ADCY7P51828 1080 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 GJA9P57773 515 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 BEX3Q00994 111 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 ST3GAL1Q11201 340 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 DUSP28Q4G0W2 176 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 CPLX2Q6PUV4 134 aaKnown RBP15.35■□□□□ 0.05
VPS28-202ENST00000377348 RNF180Q86T96 592 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 VSIG10LQ86VR7 867 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 TRIM22Q8IYM9 498 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 SCFD2Q8WU76 684 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 FERMT2Q96AC1 680 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 TBC1D32Q96NH3 1257 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 AIFM3Q96NN9 605 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 SENP6Q9GZR1 1112 aaPredicted RBP15.35■□□□□ 0.05
VPS28-202ENST00000377348 UPF3AQ9H1J1 476 aaKnown RBP15.35■□□□□ 0.05
VPS28-202ENST00000377348 TMEM260Q9NX78 707 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms