RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 CFAP45Q9UL16 551 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 CTDP1Q9Y5B0 961 aaPredicted RBP14.18□□□□□ -0.14
VRK3-202ENST00000377011 MYH6P13533 1939 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 PALM3A6NDB9 673 aaPredicted RBP14.18□□□□□ -0.14
VRK3-202ENST00000377011 SH2B2O14492 632 aaPredicted RBP14.18□□□□□ -0.14
VRK3-202ENST00000377011 CNGA1P29973 690 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 WTAPQ15007 396 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 USH1GQ495M9 461 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 DHX32Q7L7V1 743 aaKnown RBP14.18□□□□□ -0.14
VRK3-202ENST00000377011 CMTR1Q8N1G2 835 aaKnown RBP14.18□□□□□ -0.14
VRK3-202ENST00000377011 ANKRD35Q8N283 1001 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 TINF2Q9BSI4 451 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 CLSTN2Q9H4D0 955 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 ACAD9Q9H845 621 aa14.18□□□□□ -0.14
VRK3-202ENST00000377011 UQCRHLA0A096LP55 91 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 UQCRHP07919 91 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 PARP1P09874 1014 aaKnown RBP14.17□□□□□ -0.14
VRK3-202ENST00000377011 ZNF865P0CJ78 1059 aaPredicted RBP14.17□□□□□ -0.14
VRK3-202ENST00000377011 TYRO3Q06418 890 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 GRM4Q14833 912 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 CDC37Q16543 378 aaPredicted RBP14.17□□□□□ -0.14
VRK3-202ENST00000377011 QRICH1Q2TAL8 776 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 MFSD14CQ5VZR4 134 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 SLC30A10Q6XR72 485 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 Q6ZUG5 572 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.17□□□□□ -0.14
VRK3-202ENST00000377011 FAM133AQ8N9E0 248 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 CHST13Q8NET6 341 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 DDX11Q96FC9 970 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 PAWRQ96IZ0 340 aaKnown RBP14.17□□□□□ -0.14
VRK3-202ENST00000377011 TNMDQ9H2S6 317 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 CYP39A1Q9NYL5 469 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 OGDHLQ9ULD0 1010 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 LAMA3Q16787 3333 aa14.17□□□□□ -0.14
VRK3-202ENST00000377011 KLRF2D3W0D1 207 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 EXOSC10Q01780 885 aaKnown RBP14.16□□□□□ -0.14
VRK3-202ENST00000377011 BAATQ14032 418 aaPredicted RBP14.16□□□□□ -0.14
VRK3-202ENST00000377011 CCDC178Q5BJE1 867 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 NSMFQ6X4W1 530 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 CCDC144CPQ8IYA2 1237 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 RGS22Q8NE09 1264 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 KATNBL1Q9H079 304 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 LRRC37A2A6NM11 1700 aa14.16□□□□□ -0.14
VRK3-202ENST00000377011 OPLAHO14841 1288 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 CTAGE5O15320 804 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 FARP2O94887 1054 aaPredicted RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 ASPRV1Q53RT3 343 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 GPATCH4Q5T3I0 446 aaKnown RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 FERMT3Q86UX7 667 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 TRMT44Q8IYL2 757 aaKnown RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 NUP133Q8WUM0 1156 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 BRF1Q92994 677 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 DDX20Q9UHI6 824 aaKnown RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 MRVI1Q9Y6F6 885 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 LAMA2P24043 3122 aaKnown RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 H3BQV1 296 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 PLEKHA8P1O95397 391 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 FDX1P10109 184 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 LIG1P18858 919 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 NT5C2P49902 561 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 NOLC1Q14978 699 aaKnown RBP eCLIP14.15□□□□□ -0.14
VRK3-202ENST00000377011 ZNF654Q8IZM8 581 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 MTMR8Q96EF0 704 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 ZNF274Q96GC6 653 aaPredicted RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 COL20A1Q9P218 1284 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 DIS3Q9Y2L1 958 aaKnown RBP14.15□□□□□ -0.14
VRK3-202ENST00000377011 PFASO15067 1338 aa14.15□□□□□ -0.14
VRK3-202ENST00000377011 POTEB2H3BUK9 544 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 COPB2P35606 906 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 MAMDC4Q6UXC1 1216 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 PIGSQ96S52 555 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 DACT1Q9NYF0 836 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 FBXO40Q9UH90 709 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 SZT2Q5T011 3432 aa14.14□□□□□ -0.15
VRK3-202ENST00000377011 MYH15Q9Y2K3 1946 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.13□□□□□ -0.15
VRK3-202ENST00000377011 hCG_1642624A0A1W2PR95 340 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 EVCP57679 992 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 SCRN1Q12765 414 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 STK3Q13188 491 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 GJC2Q5T442 439 aaPredicted RBP14.13□□□□□ -0.15
VRK3-202ENST00000377011 ARMCX2Q7L311 632 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 EEPD1Q7L9B9 569 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 HOMER1Q86YM7 354 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 NSUN7Q8NE18 718 aaKnown RBP14.13□□□□□ -0.15
VRK3-202ENST00000377011 MYRIPQ8NFW9 859 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 PDGFCQ9NRA1 345 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.13□□□□□ -0.15
VRK3-202ENST00000377011 WDR19Q8NEZ3 1342 aa14.13□□□□□ -0.15
VRK3-202ENST00000377011 MYADML2A6NDP7 307 aa14.12□□□□□ -0.15
VRK3-202ENST00000377011 SEPT4O43236 478 aa14.12□□□□□ -0.15
VRK3-202ENST00000377011 DHX16O60231 1041 aaKnown RBP14.12□□□□□ -0.15
VRK3-202ENST00000377011 JAK2O60674 1132 aa14.12□□□□□ -0.15
VRK3-202ENST00000377011 CALML3P27482 149 aa14.12□□□□□ -0.15
VRK3-202ENST00000377011 GTF2F1P35269 517 aaKnown RBP eCLIP14.12□□□□□ -0.15
VRK3-202ENST00000377011 RPS6P62753 249 aaKnown RBP14.12□□□□□ -0.15
VRK3-202ENST00000377011 FGD1P98174 961 aa14.12□□□□□ -0.15
VRK3-202ENST00000377011 TKFCQ3LXA3 575 aa14.12□□□□□ -0.15
VRK3-202ENST00000377011 SRBD1Q8N5C6 995 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms