RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SEPT2Q15019 361 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 SPA17Q15506 151 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 VWA3BQ502W6 1294 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 MUM1L1Q5H9M0 696 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 NCAPH2Q6IBW4 605 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 AMIGO3Q86WK7 504 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 FNBP4Q8N3X1 1017 aaPredicted RBP15.92■□□□□ 0.14
CD48-201ENST00000368045 EDEM3Q9BZQ6 932 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 SEMA6BQ9H3T3 888 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 PDE11AQ9HCR9 933 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 ZCCHC17Q9NP64 241 aaKnown RBP15.92■□□□□ 0.14
CD48-201ENST00000368045 BIN2Q9UBW5 565 aaPredicted RBP15.92■□□□□ 0.14
CD48-201ENST00000368045 PLAGL2Q9UPG8 496 aa15.92■□□□□ 0.14
CD48-201ENST00000368045 MYO3BQ8WXR4 1341 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 USO1O60763 962 aaKnown RBP15.91■□□□□ 0.14
CD48-201ENST00000368045 BBOX1O75936 387 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 ATP1A1P05023 1023 aaKnown RBP15.91■□□□□ 0.14
CD48-201ENST00000368045 MCM6Q14566 821 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 CASP8Q14790 479 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 MAN2A1Q16706 1144 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 PPP4R3AQ6IN85 833 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 PRR5LQ6MZQ0 368 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 LARP4BQ92615 738 aaKnown RBP15.91■□□□□ 0.14
CD48-201ENST00000368045 RUBCNQ92622 972 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 RAD54LQ92698 747 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 CCDC42Q96M95 316 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 PNMA5Q96PV4 448 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 CPVLQ9H3G5 476 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 MED4Q9NPJ6 270 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 RIC8AQ9NPQ8 531 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 MTMR4Q9NYA4 1195 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 SIK3Q9Y2K2 1263 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 SUGT1Q9Y2Z0 365 aa15.91■□□□□ 0.14
CD48-201ENST00000368045 IGKV6D-41A0A0C4DH26 115 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 MYMKA6NI61 221 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 SLC26A4O43511 780 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 TXKP42681 527 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 TMEM119Q4V9L6 283 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 MFSD14BQ5SR56 506 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 KRT79Q5XKE5 535 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 PROM2Q8N271 834 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 FAM71BQ8TC56 605 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 SECISBP2LQ93073 1101 aaKnown RBP15.9■□□□□ 0.14
CD48-201ENST00000368045 NGLY1Q96IV0 654 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 NAP1L4Q99733 375 aaKnown RBP15.9■□□□□ 0.14
CD48-201ENST00000368045 NDST4Q9H3R1 872 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 VAT1LQ9HCJ6 419 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 ADAM21Q9UKJ8 722 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 LCA5LO95447 670 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 TFRCP02786 760 aaKnown RBP15.9■□□□□ 0.14
CD48-201ENST00000368045 KLK7P49862 253 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 ST5P78524 1137 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 GABPAQ06546 454 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 HSP90B2PQ58FF3 399 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 TMC4Q7Z404 712 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 TRIM58Q8NG06 486 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 GPR101Q96P66 508 aaPredicted RBP15.9■□□□□ 0.14
CD48-201ENST00000368045 TSG101Q99816 390 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 LACRTQ9GZZ8 138 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 SLC39A2Q9NP94 309 aa15.9■□□□□ 0.14
CD48-201ENST00000368045 MYH1P12882 1939 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 PNMA6FA0A0J9YX94 578 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 TACC1O75410 805 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 GCFC2P16383 781 aaKnown RBP15.89■□□□□ 0.13
CD48-201ENST00000368045 PRLRP16471 622 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 ITIH3Q06033 890 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 EHHADHQ08426 723 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 MMS19Q96T76 1030 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 UBA5Q9GZZ9 404 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 TMEM260Q9NX78 707 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 SWAP70Q9UH65 585 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 JRKLQ9Y4A0 524 aa15.89■□□□□ 0.13
CD48-201ENST00000368045 THSD7AQ9UPZ6 1657 aa15.88■□□□□ 0.13
CD48-201ENST00000368045 RCCD1A6NED2 376 aa15.88■□□□□ 0.13
CD48-201ENST00000368045 ENC1O14682 589 aa15.88■□□□□ 0.13
CD48-201ENST00000368045 HOXA10P31260 410 aaPredicted RBP15.88■□□□□ 0.13
CD48-201ENST00000368045 AARSP49588 968 aaKnown RBP eCLIP15.88■□□□□ 0.13
CD48-201ENST00000368045 ZNF572Q7Z3I7 529 aaPredicted RBP15.88■□□□□ 0.13
CD48-201ENST00000368045 SNX29Q8TEQ0 813 aa15.88■□□□□ 0.13
CD48-201ENST00000368045 HDAC6Q9UBN7 1215 aa15.88■□□□□ 0.13
CD48-201ENST00000368045 LY75O60449 1722 aa15.88■□□□□ 0.13
CD48-201ENST00000368045 SLC37A4O43826 429 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 HNRNPH2P55795 449 aaKnown RBP15.87■□□□□ 0.13
CD48-201ENST00000368045 CCDC70Q6NSX1 233 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 FAM196AQ6ZSG2 479 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 SLC51AQ86UW1 340 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 C8orf37Q96NL8 207 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 CDK5RAP2Q96SN8 1893 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 GLT8D2Q9H1C3 349 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 NUCKS1Q9H1E3 243 aaKnown RBP15.87■□□□□ 0.13
CD48-201ENST00000368045 DAGLAQ9Y4D2 1042 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 TAF1LQ8IZX4 1826 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 TDP2O95551 362 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 TTLL1O95922 423 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 IDEP14735 1019 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 CLK2P49760 499 aaKnown RBP15.87■□□□□ 0.13
CD48-201ENST00000368045 ZNF543Q08ER8 600 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 CCDC96Q2M329 555 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 HYIQ5T013 277 aa15.87■□□□□ 0.13
CD48-201ENST00000368045 GPATCH4Q5T3I0 446 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms