RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 BAG3O95817 575 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 MAGEA1P43355 309 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 MIIPQ5JXC2 388 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 FAM114A1Q8IWE2 563 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 NUDT12Q9BQG2 462 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLIP3-201ENST00000360535 ARHGAP20Q9P2F6 1191 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 MYMKA6NI61 221 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 LRRC53A6NM62 1247 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 USP17L5A8MUK1 530 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 KIF11P52732 1056 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 AMPD3Q01432 767 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 SBK1Q52WX2 424 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 WDR93Q6P2C0 686 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 NUP58Q9BVL2 599 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 NDST4Q9H3R1 872 aa13.49□□□□□ -0.25
CLIP3-201ENST00000360535 BCL9LQ86UU0 1499 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 GOLGA6BA6NDN3 693 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 EIF3CLB5ME19 914 aaKnown RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 RASA1P20936 1047 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 VAV2P52735 878 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 TUBB4BP68371 445 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CALCRLQ16602 461 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 PAPD7Q5XG87 772 aaKnown RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 SPTY2D1Q68D10 685 aaPredicted RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CNNM4Q6P4Q7 775 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 TEX11Q8IYF3 940 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 IFT81Q8WYA0 676 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 EIF3CQ99613 913 aaKnown RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 ANKRD2Q9GZV1 360 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 BTDP43251 543 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 UBE2SQ16763 222 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 TPTE2Q6XPS3 522 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CERS3Q8IU89 383 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 REXO1Q8N1G1 1221 aaKnown RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 SNX29Q8TEQ0 813 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CEP95Q96GE4 821 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 SH3GLB2Q9NR46 395 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 PSD3Q9NYI0 1048 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 PACSIN2Q9UNF0 486 aaPredicted RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 ARAP2Q8WZ64 1704 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 LRP5O75197 1615 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 ESYT3A0FGR9 886 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 IVLP07476 585 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CDK8P49336 464 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CCDC40Q4G0X9 1142 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 KCTD16Q68DU8 428 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 CCNI2Q6ZMN8 369 aaPredicted RBP13.48□□□□□ -0.25
CLIP3-201ENST00000360535 DNAAF5Q86Y56 855 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 MED4Q9NPJ6 270 aa13.48□□□□□ -0.25
CLIP3-201ENST00000360535 XIRP1Q702N8 1843 aaKnown RBP13.47□□□□□ -0.25
CLIP3-201ENST00000360535 PLCH1Q4KWH8 1693 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 FLT1P17948 1338 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 GOLGA6CA6NDK9 693 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 M0R2N6 131 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 TRAF5O00463 557 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 SLC37A4O43826 429 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 GOLGA6DP0CG33 693 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 GNA11P29992 359 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 VWA3BQ502W6 1294 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 CLEC4GQ6UXB4 293 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 KRT25Q7Z3Z0 450 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 MMTAG2Q9BU76 263 aaKnown RBP13.47□□□□□ -0.25
CLIP3-201ENST00000360535 GOLGA6AQ9NYA3 693 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 MEA1Q16626 185 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 TMED8Q6PL24 325 aaPredicted RBP13.47□□□□□ -0.25
CLIP3-201ENST00000360535 TTYH3Q9C0H2 523 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 DISP2A7MBM2 1401 aa13.47□□□□□ -0.25
CLIP3-201ENST00000360535 PALM3A6NDB9 673 aaPredicted RBP13.46□□□□□ -0.25
CLIP3-201ENST00000360535 SLURP2P0DP57 97 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 CCDC170Q8IYT3 715 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 PROCA1Q8NCQ7 364 aaPredicted RBP13.46□□□□□ -0.25
CLIP3-201ENST00000360535 NOC3LQ8WTT2 800 aaKnown RBP13.46□□□□□ -0.25
CLIP3-201ENST00000360535 RUFY1Q96T51 708 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 SALL4Q9UJQ4 1053 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 DOT1LQ8TEK3 1739 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 FTCDO95954 541 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 TUBBP07437 444 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 KCNK18Q7Z418 384 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 FAM76AQ8TAV0 307 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 LARP4BQ92615 738 aaKnown RBP13.46□□□□□ -0.25
CLIP3-201ENST00000360535 SNX12Q9UMY4 172 aa13.46□□□□□ -0.25
CLIP3-201ENST00000360535 ZSCAN5CA6NGD5 496 aaPredicted RBP13.46□□□□□ -0.26
CLIP3-201ENST00000360535 MCM3P25205 808 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 SLC16A2P36021 539 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 SLC1A4P43007 532 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 PAFAH1B1P43034 410 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 SPATA4Q8NEY3 305 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 OSBPL9Q96SU4 736 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 CENPHQ9H3R5 247 aa13.46□□□□□ -0.26
CLIP3-201ENST00000360535 A0A1B0GUL6 1792 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 CCT5P48643 541 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 ATP1A2P50993 1020 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 GUCY2FP51841 1108 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 GRB10Q13322 594 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 AMIGO3Q86WK7 504 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 CREG2Q8IUH2 290 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 TRIM58Q8NG06 486 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 DDX12PQ92771 950 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 ALS2CR12Q96Q35 445 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms