RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 MTIF3Q9H2K0 278 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 TRMT13Q9NUP7 481 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 TET1Q8NFU7 2136 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 TANC1Q9C0D5 1861 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 TNKSO95271 1327 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 ABCB11O95342 1321 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 B4DLN1 442 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 MRPL12P52815 198 aaKnown RBP16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 OTOP2Q7RTS6 562 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 SCLYQ96I15 445 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 MAF1Q9H063 256 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 GPHNQ9NQX3 736 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 CTNNA3Q9UI47 895 aa16.91■□□□□ 0.3
PRPF40A-201ENST00000354363 RAD50Q92878 1312 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 VCANP13611 3396 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 ARIH2O95376 493 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 SUPT20HL2P0C7V6 817 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 TXNP10599 105 aaKnown RBP16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 CYP2C9P11712 490 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 QRICH1Q2TAL8 776 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 NBPF20Q3BBV1 942 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 BRDTQ58F21 947 aaPredicted RBP16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 VWCEQ96DN2 955 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 KRT23Q9C075 422 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 IL25Q9H293 177 aa16.9■□□□□ 0.3
PRPF40A-201ENST00000354363 A6NJR5 290 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 PARP1P09874 1014 aaKnown RBP16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 TTLL4Q14679 1199 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 RAB30Q15771 203 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 RPUSD2Q8IZ73 545 aaKnown RBP16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 USP38Q8NB14 1042 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 SYTL5Q8TDW5 730 aaPredicted RBP16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 TAAR1Q96RJ0 339 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 COL20A1Q9P218 1284 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 MSRAQ9UJ68 235 aa16.89■□□□□ 0.29
PRPF40A-201ENST00000354363 KPNA6O60684 536 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 CCDC62Q6P9F0 684 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 PPP1R13LQ8WUF5 828 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 CNNM2Q9H8M5 875 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 JMJD4Q9H9V9 463 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 VAT1LQ9HCJ6 419 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 CHD9Q3L8U1 2897 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 DHX16O60231 1041 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 FAM47CQ5HY64 1035 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 NFRKBQ6P4R8 1299 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 FBXO11Q86XK2 927 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 MCF2L2Q86YR7 1114 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 NSUN6Q8TEA1 469 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 UBAC1Q9BSL1 405 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 NKX2-4Q9H2Z4 354 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 PRDM12Q9H4Q4 367 aa16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 YBX2Q9Y2T7 364 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 MRPL11Q9Y3B7 192 aaKnown RBP16.88■□□□□ 0.29
PRPF40A-201ENST00000354363 PDE4AP27815 886 aa16.87■□□□□ 0.29
PRPF40A-201ENST00000354363 IFIT1BQ5T764 474 aaKnown RBP16.87■□□□□ 0.29
PRPF40A-201ENST00000354363 SEPT14Q6ZU15 432 aa16.87■□□□□ 0.29
PRPF40A-201ENST00000354363 GAS2L1Q99501 681 aaPredicted RBP16.87■□□□□ 0.29
PRPF40A-201ENST00000354363 SLC4A7Q9Y6M7 1214 aa16.87■□□□□ 0.29
PRPF40A-201ENST00000354363 PFKMP08237 780 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 GSPT1P15170 499 aaKnown RBP16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 PTPN11Q06124 597 aaPredicted RBP16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 SEC23AQ15436 765 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 LY6KQ17RY6 165 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 TTC22Q5TAA0 569 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 STAG2Q8N3U4 1231 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 IWS1Q96ST2 819 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 RMDN3Q96TC7 470 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 CHD7Q9P2D1 2997 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 PTPRSQ13332 1948 aa16.86■□□□□ 0.29
PRPF40A-201ENST00000354363 ZBBXA8MT70 800 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 RABGGTBP53611 331 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 ARHGAP1Q07960 439 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 STXBP2Q15833 593 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 CYB5R4Q7L1T6 521 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 DEFB128Q7Z7B8 93 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 AFG1LQ8WV93 481 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 GH1P01241 217 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 MMP3P08254 477 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 ADGRE1Q14246 886 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 MTMR8Q96EF0 704 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 AMNQ9BXJ7 453 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 SLC28A3Q9HAS3 691 aa16.85■□□□□ 0.29
PRPF40A-201ENST00000354363 KLRF2D3W0D1 207 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 PITPNM1O00562 1244 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 OPLAHO14841 1288 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 CFBP00751 764 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 EIF2AK2P19525 551 aaKnown RBP16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 HSD17B4P51659 736 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 ARHGEF16Q5VV41 709 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 PXMP2Q9NR77 195 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 MAD2L2Q9UI95 211 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 PCDHA11Q9Y5I1 949 aa16.84■□□□□ 0.29
PRPF40A-201ENST00000354363 SPTBN5Q9NRC6 3674 aaKnown RBP16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 PPP1R11O60927 126 aaPredicted RBP16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 NR3C2P08235 984 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 IQCF3P0C7M6 154 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 MYOGP15173 224 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 ATP2A2P16615 1042 aaKnown RBP16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 RFC2P35250 354 aa16.83■□□□□ 0.28
PRPF40A-201ENST00000354363 CHMP4BP1P59074 171 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms