RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SLC9C1Q4G0N8 1177 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 TRMT44Q8IYL2 757 aaKnown RBP25.42■■□□□ 1.66
SHMT1-203ENST00000354098 RASGRP4Q8TDF6 673 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 PGBD1Q96JS3 809 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 PXMP2Q9NR77 195 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 ARHGEF16Q5VV41 709 aa25.41■■□□□ 1.66
SHMT1-203ENST00000354098 JAKMIP3Q5VZ66 844 aa25.41■■□□□ 1.66
SHMT1-203ENST00000354098 ARMCX2Q7L311 632 aa25.41■■□□□ 1.66
SHMT1-203ENST00000354098 NSUN6Q8TEA1 469 aaKnown RBP25.41■■□□□ 1.66
SHMT1-203ENST00000354098 GLT8D2Q9H1C3 349 aa25.41■■□□□ 1.66
SHMT1-203ENST00000354098 PCDHA4Q9UN74 947 aa25.41■■□□□ 1.66
SHMT1-203ENST00000354098 SNAI1O95863 264 aaPredicted RBP25.4■■□□□ 1.66
SHMT1-203ENST00000354098 HMGCRP04035 888 aa25.4■■□□□ 1.66
SHMT1-203ENST00000354098 GUCY1B3Q02153 619 aa25.4■■□□□ 1.66
SHMT1-203ENST00000354098 PRAMEF19Q5SWL8 479 aa25.4■■□□□ 1.66
SHMT1-203ENST00000354098 PCDHA6Q9UN73 950 aa25.4■■□□□ 1.66
SHMT1-203ENST00000354098 PCDHA8Q9Y5H6 950 aa25.4■■□□□ 1.66
SHMT1-203ENST00000354098 ASB14A6NK59 587 aa25.39■■□□□ 1.66
SHMT1-203ENST00000354098 INHAP05111 366 aa25.39■■□□□ 1.66
SHMT1-203ENST00000354098 CACNB2Q08289 660 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-203ENST00000354098 KRT40Q6A162 431 aa25.39■■□□□ 1.66
SHMT1-203ENST00000354098 BLIDQ8IZY5 108 aa25.39■■□□□ 1.66
SHMT1-203ENST00000354098 REXO1Q8N1G1 1221 aaKnown RBP25.39■■□□□ 1.66
SHMT1-203ENST00000354098 INTS4Q96HW7 963 aaKnown RBP25.39■■□□□ 1.66
SHMT1-203ENST00000354098 C8orf76Q96K31 380 aa25.39■■□□□ 1.66
SHMT1-203ENST00000354098 SYNGAP1Q96PV0 1343 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 SPDYE3A6NKU9 549 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 MFSD14CQ5VZR4 134 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 FAM177A1Q8N128 213 aaPredicted RBP25.39■■□□□ 1.65
SHMT1-203ENST00000354098 MSL3Q8N5Y2 521 aaKnown RBP25.39■■□□□ 1.65
SHMT1-203ENST00000354098 IL31RAQ8NI17 732 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 OXER1Q8TDS5 423 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 MORC4Q8TE76 937 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 PDCD2LQ9BRP1 358 aa25.39■■□□□ 1.65
SHMT1-203ENST00000354098 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.39■■□□□ 1.65
SHMT1-203ENST00000354098 EDNRBP24530 442 aa25.38■■□□□ 1.65
SHMT1-203ENST00000354098 TRIM29Q14134 588 aa25.38■■□□□ 1.65
SHMT1-203ENST00000354098 PGM5Q15124 567 aa25.38■■□□□ 1.65
SHMT1-203ENST00000354098 DAGLBQ8NCG7 672 aa25.38■■□□□ 1.65
SHMT1-203ENST00000354098 BICD2Q8TD16 824 aa25.38■■□□□ 1.65
SHMT1-203ENST00000354098 ZFP91Q96JP5 570 aaPredicted RBP25.38■■□□□ 1.65
SHMT1-203ENST00000354098 RPTORQ8N122 1335 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 M0R2N6 131 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 MYCP01106 439 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-203ENST00000354098 NR3C2P08235 984 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 PRKAR2AP13861 404 aaKnown RBP25.37■■□□□ 1.65
SHMT1-203ENST00000354098 GALNT17Q6IS24 598 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 EEPD1Q7L9B9 569 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 TEX2Q8IWB9 1127 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 FRMPD4Q14CM0 1322 aa25.37■■□□□ 1.65
SHMT1-203ENST00000354098 MMP1P03956 469 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 SPRYD3Q8NCJ5 442 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 TRPV1Q8NER1 839 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 FBXO18Q8NFZ0 1043 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 IWS1Q96ST2 819 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 ANO3Q9BYT9 981 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 FOSP01100 380 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-203ENST00000354098 MYCLP12524 364 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-203ENST00000354098 PDE4DQ08499 809 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 AP3B2Q13367 1082 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 MAP3K21Q5TCX8 1036 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 KATNBL1Q9H079 304 aa25.36■■□□□ 1.65
SHMT1-203ENST00000354098 LOC102724159A0A0B4J2E5 919 aa25.35■■□□□ 1.65
SHMT1-203ENST00000354098 PWP2Q15269 919 aaKnown RBP25.35■■□□□ 1.65
SHMT1-203ENST00000354098 MTFR1Q15390 333 aa25.35■■□□□ 1.65
SHMT1-203ENST00000354098 VSIG10LQ86VR7 867 aa25.35■■□□□ 1.65
SHMT1-203ENST00000354098 CNPY2Q9Y2B0 182 aa25.35■■□□□ 1.65
SHMT1-203ENST00000354098 KIF3AQ9Y496 699 aa25.35■■□□□ 1.65
SHMT1-203ENST00000354098 MCM3APO60318 1980 aa25.35■■□□□ 1.65
SHMT1-203ENST00000354098 BTBD18B2RXH4 712 aa25.34■■□□□ 1.65
SHMT1-203ENST00000354098 CYBAP13498 195 aa25.34■■□□□ 1.65
SHMT1-203ENST00000354098 CCND3P30281 292 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-203ENST00000354098 NR5A1Q13285 461 aa25.34■■□□□ 1.65
SHMT1-203ENST00000354098 FBXO16Q8IX29 292 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-203ENST00000354098 ARMC5Q96C12 935 aa25.34■■□□□ 1.65
SHMT1-203ENST00000354098 ZNF333Q96JL9 665 aa25.34■■□□□ 1.65
SHMT1-203ENST00000354098 MPHOSPH6Q99547 160 aaKnown RBP25.34■■□□□ 1.65
SHMT1-203ENST00000354098 HSP90AA1P07900 732 aaKnown RBP25.33■■□□□ 1.65
SHMT1-203ENST00000354098 ZNF865P0CJ78 1059 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-203ENST00000354098 KRT2P35908 639 aa25.33■■□□□ 1.65
SHMT1-203ENST00000354098 MRPS9P82933 396 aaKnown RBP25.33■■□□□ 1.65
SHMT1-203ENST00000354098 ACVR2BQ13705 512 aa25.33■■□□□ 1.65
SHMT1-203ENST00000354098 STXBP2Q15833 593 aa25.33■■□□□ 1.65
SHMT1-203ENST00000354098 DIS3L2Q8IYB7 885 aaKnown RBP25.33■■□□□ 1.65
SHMT1-203ENST00000354098 ABHD16BQ9H3Z7 469 aa25.33■■□□□ 1.65
SHMT1-203ENST00000354098 ZHX1Q9UKY1 873 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-203ENST00000354098 B4DLN1 442 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 LARP1BQ659C4 914 aaKnown RBP25.32■■□□□ 1.64
SHMT1-203ENST00000354098 PDGFCQ9NRA1 345 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 LRRC37A2A6NM11 1700 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 CCND2P30279 289 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 EARS2Q5JPH6 523 aaKnown RBP25.32■■□□□ 1.64
SHMT1-203ENST00000354098 PCNX4Q63HM2 1172 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 UNC93B1Q9H1C4 597 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 RTEL1Q9NZ71 1219 aa25.32■■□□□ 1.64
SHMT1-203ENST00000354098 SREBF1P36956 1147 aa25.31■■□□□ 1.64
SHMT1-203ENST00000354098 BECN1Q14457 450 aa25.31■■□□□ 1.64
SHMT1-203ENST00000354098 MCTP2Q6DN12 878 aa25.31■■□□□ 1.64
SHMT1-203ENST00000354098 TAPT1Q6NXT6 567 aa25.31■■□□□ 1.64
SHMT1-203ENST00000354098 TNFRSF25Q93038 417 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms