RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 AATFQ9NY61 560 aaKnown RBP eCLIP13.65□□□□□ -0.22
COL6A3-203ENST00000353578 MKL2Q9ULH7 1088 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 CAB39Q9Y376 341 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-203ENST00000353578 GPC4O75487 556 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 MBIPQ9NS73 344 aa13.65□□□□□ -0.22
COL6A3-203ENST00000353578 PITPNM2Q9BZ72 1349 aa13.65□□□□□ -0.23
COL6A3-203ENST00000353578 EXOC1LA0A1B0GW35 172 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TMEM191CA6NGB0 347 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 KRT37O76014 449 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TMEM191BP0C7N4 346 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TMEM259Q4ZIN3 620 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 GNGT2O14610 69 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 GTPBP6O43824 516 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 SRGAP2BP0DMP2 458 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TRAPPC10P48553 1259 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 PAPOLAP51003 745 aaKnown RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 MAPRE2Q15555 327 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TRIM56Q9BRZ2 755 aaKnown RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 STX18Q9P2W9 335 aaKnown RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 AREL1O15033 823 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 ADKP55263 362 aaKnown RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 GRIN1Q05586 938 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TBC1D1Q86TI0 1168 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 SBNO2Q9Y2G9 1366 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 GSTA1P08263 222 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 RCN2Q14257 317 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 TRIM16LQ309B1 348 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 KMT5BQ4FZB7 885 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 WDR75Q8IWA0 830 aaKnown RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 ANTXR1Q9H6X2 564 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 ATXN2Q99700 1313 aaKnown RBP13.64□□□□□ -0.23
COL6A3-203ENST00000353578 CYTH1Q15438 398 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 CCDC134Q9H6E4 229 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 DNAJC9Q8WXX5 260 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 CNPY3Q9BT09 278 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 GOLGA8MH3BSY2 632 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 ANLNQ9NQW6 1124 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 ATG3Q9NT62 314 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 NSMCE1Q8WV22 266 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 EPB41L5Q9HCM4 733 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 GRIN2BQ13224 1484 aa13.64□□□□□ -0.23
COL6A3-203ENST00000353578 ENO4A6NNW6 628 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ABLIM1O14639 778 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 CDH2P19022 906 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 WARS2Q9UGM6 360 aaKnown RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 MAGEA13PA6NCF6 341 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 GJC1P36383 396 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 NXNQ6DKJ4 435 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 NEK8Q86SG6 692 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ZFRQ96KR1 1074 aaKnown RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 CD209Q9NNX6 404 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ATAD3AQ9NVI7 634 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 RTEL1Q9NZ71 1219 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 PCGF5Q86SE9 256 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 RAD21L1Q9H4I0 556 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 RASGRF1Q13972 1273 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 MIF4GDA9UHW6 222 aaKnown RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 SERPINB3P29508 390 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ESCO1Q5FWF5 840 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 CC2D2BQ6DHV5 1058 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 CASC4Q6P4E1 433 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 TRAF7Q6Q0C0 670 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 RPGRQ92834 1020 aaKnown RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 TRIM8Q9BZR9 551 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 APOBEC2Q9Y235 224 aaKnown RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 H2AFZP0C0S5 128 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 H2AFVQ71UI9 128 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 COQ7Q99807 217 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ADGRA3Q8IWK6 1321 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 NR1I2O75469 434 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 TLK2Q86UE8 772 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ZNF513Q8N8E2 541 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-203ENST00000353578 PRAM1Q96QH2 718 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 GINS4Q9BRT9 223 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 PYCARDQ9ULZ3 195 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ABCC12Q96J65 1359 aa13.63□□□□□ -0.23
COL6A3-203ENST00000353578 ABCB6Q9NP58 842 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 CCDC61Q9Y6R9 512 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 MYL6BP14649 208 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 HADHQ16836 314 aaKnown RBP13.62□□□□□ -0.23
COL6A3-203ENST00000353578 DNMBPQ6XZF7 1577 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 RMI1Q9H9A7 625 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 HACD3Q9P035 362 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 CAPN11Q9UMQ6 739 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 TUBA3CQ13748 450 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 CFAP70Q5T0N1 1121 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 PPP1R14BQ96C90 147 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 ANKRD12Q6UB98 2062 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 GGPS1O95749 300 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 TTC38Q5R3I4 469 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 CCDC117Q8IWD4 279 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-203ENST00000353578 DESI2Q9BSY9 194 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 C19orf44Q9H6X5 657 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-203ENST00000353578 ANKFY1Q9P2R3 1169 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 FAM107AO95990 144 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 DR1Q01658 176 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 MRPL50Q8N5N7 158 aaKnown RBP13.62□□□□□ -0.23
COL6A3-203ENST00000353578 FNBP1Q96RU3 617 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 FAM25AB3EWG3 89 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms