RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 NUP98P52948 1817 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 TRAF5O00463 557 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 VAV2P52735 878 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 TUBB4BP68371 445 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 AMPD3Q01432 767 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 CCNI2Q6ZMN8 369 aaPredicted RBP15.99■□□□□ 0.15
CPSF7-201ENST00000340437 NEK8Q86SG6 692 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 ARHGAP20Q9P2F6 1191 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 EIF3CLB5ME19 914 aaKnown RBP15.99■□□□□ 0.15
CPSF7-201ENST00000340437 TDP2O95551 362 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 FTCDO95954 541 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 PAFAH1B1P43034 410 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 WDR93Q6P2C0 686 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 TRMT1LQ7Z2T5 733 aaKnown RBP15.99■□□□□ 0.15
CPSF7-201ENST00000340437 KIAA0895Q8NCT3 520 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 LINC00116Q8NCU8 138 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 EIF3CQ99613 913 aaKnown RBP15.99■□□□□ 0.15
CPSF7-201ENST00000340437 NUP58Q9BVL2 599 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 PSD3Q9NYI0 1048 aa15.99■□□□□ 0.15
CPSF7-201ENST00000340437 GNPATO15228 680 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 GRM4Q14833 912 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 DGKHQ86XP1 1220 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 MICALL1Q8N3F8 863 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 SNX29Q8TEQ0 813 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 TOGARAM1Q9Y4F4 1720 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 MYMKA6NI61 221 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 USP17L5A8MUK1 530 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 BAG3O95817 575 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 FECHP22830 423 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 CALCRLQ16602 461 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 UBE2SQ16763 222 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 PAPD7Q5XG87 772 aaKnown RBP15.98■□□□□ 0.15
CPSF7-201ENST00000340437 CNNM4Q6P4Q7 775 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 NUDT12Q9BQG2 462 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 MYH13Q9UKX3 1938 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 ZSCAN5CA6NGD5 496 aaPredicted RBP15.98■□□□□ 0.15
CPSF7-201ENST00000340437 PCP11498 1178 aaKnown RBP15.98■□□□□ 0.15
CPSF7-201ENST00000340437 MCM3P25205 808 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 KCNB1Q14721 858 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 MIIPQ5JXC2 388 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 ALS2CR12Q96Q35 445 aa15.98■□□□□ 0.15
CPSF7-201ENST00000340437 IQCEQ6IPM2 695 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 TEX11Q8IYF3 940 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 REXO1Q8N1G1 1221 aaKnown RBP15.97■□□□□ 0.15
CPSF7-201ENST00000340437 SH2D3CQ8N5H7 860 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 CCSER1Q9C0I3 900 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 COL4A1P02462 1669 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 MYH3P11055 1940 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 VWA3BQ502W6 1294 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 TUBBP07437 444 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 EPS15P42566 896 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 SLC1A4P43007 532 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 NFIXQ14938 502 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 SF3B3Q15393 1217 aaKnown RBP15.97■□□□□ 0.15
CPSF7-201ENST00000340437 SPATA4Q8NEY3 305 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 TSPYL1Q9H0U9 437 aa15.97■□□□□ 0.15
CPSF7-201ENST00000340437 KRT18P05783 430 aaKnown RBP15.96■□□□□ 0.15
CPSF7-201ENST00000340437 FGRP09769 529 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 GNA11P29992 359 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 LIG3P49916 1009 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 GNGT1P63211 74 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 RAPGEF1Q13905 1077 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 SPTY2D1Q68D10 685 aaPredicted RBP15.96■□□□□ 0.15
CPSF7-201ENST00000340437 C8orf74Q6P047 294 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 TRIM58Q8NG06 486 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 OSBPL9Q96SU4 736 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 SNX12Q9UMY4 172 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 SLC16A2P36021 539 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 BTDP43251 543 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 KRT25Q7Z3Z0 450 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 KLHL7Q8IXQ5 586 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 CEP95Q96GE4 821 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 GOLPH3Q9H4A6 298 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 SALL4Q9UJQ4 1053 aa15.96■□□□□ 0.15
CPSF7-201ENST00000340437 MPHOSPH10O00566 681 aaKnown RBP15.96■□□□□ 0.14
CPSF7-201ENST00000340437 SLURP2P0DP57 97 aa15.96■□□□□ 0.14
CPSF7-201ENST00000340437 CDK8P49336 464 aa15.96■□□□□ 0.14
CPSF7-201ENST00000340437 POLR2FP61218 127 aaKnown RBP15.96■□□□□ 0.14
CPSF7-201ENST00000340437 CCDC170Q8IYT3 715 aa15.96■□□□□ 0.14
CPSF7-201ENST00000340437 BCAS4Q8TDM0 211 aa15.96■□□□□ 0.14
CPSF7-201ENST00000340437 NOC3LQ8WTT2 800 aaKnown RBP15.96■□□□□ 0.14
CPSF7-201ENST00000340437 STRCP1A6NGW2 1772 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 SLC37A4O43826 429 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 RASA1P20936 1047 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 TMED8Q6PL24 325 aaPredicted RBP15.95■□□□□ 0.14
CPSF7-201ENST00000340437 TPTE2Q6XPS3 522 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 LARP4BQ92615 738 aaKnown RBP15.95■□□□□ 0.14
CPSF7-201ENST00000340437 JRKLQ9Y4A0 524 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 EHHADHQ08426 723 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 TMEM266Q2M3C6 531 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 CREG2Q8IUH2 290 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 DDX12PQ92771 950 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 RBM12Q9NTZ6 932 aaKnown RBP15.95■□□□□ 0.14
CPSF7-201ENST00000340437 NPHP3-ACAD11A0A0J9YXS1 232 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 GUCY2DQ02846 1103 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 MEA1Q16626 185 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 KRT79Q5XKE5 535 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 KCNK18Q7Z418 384 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 ARL8AQ96BM9 186 aa15.95■□□□□ 0.14
CPSF7-201ENST00000340437 ANKRD2Q9GZV1 360 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms