RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 PDXDC2PQ6P474 469 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 CTR9Q6PD62 1173 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 ZNF662Q6ZS27 426 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 RASGRP2Q7LDG7 609 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 ZFPM1Q8IX07 1006 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 ANKRD20A12PQ8NF67 263 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 NUP133Q8WUM0 1156 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 SYMPKQ92797 1274 aaKnown RBP12.14□□□□□ -0.47
RTN3-201ENST00000338850 IQCDQ96DY2 449 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 LZTS2Q9BRK4 669 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 CUEDC2Q9H467 287 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 EFCC1Q9HA90 598 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 ZFYVE28Q9HCC9 887 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 INCENPQ9NQS7 918 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 PTPN22Q9Y2R2 807 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 BTBD19C9JJ37 291 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 SMARCA1P28370 1054 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 CASQ1P31415 396 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 TXLNAP40222 546 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 CLCN6P51797 869 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 PPATQ06203 517 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 TMTC1Q8IUR5 882 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 MIGA1Q8NAN2 632 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 CCDC148Q8NFR7 591 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 NOC3LQ8WTT2 800 aaKnown RBP12.13□□□□□ -0.47
RTN3-201ENST00000338850 SDR42E1Q8WUS8 393 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 FAM163AQ96GL9 167 aaPredicted RBP12.13□□□□□ -0.47
RTN3-201ENST00000338850 ZKSCAN3Q9BRR0 538 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 IDI2Q9BXS1 227 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 UBXN6Q9BZV1 441 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 ZCCHC17Q9NP64 241 aaKnown RBP12.13□□□□□ -0.47
RTN3-201ENST00000338850 DCP1AQ9NPI6 582 aaPredicted RBP12.13□□□□□ -0.47
RTN3-201ENST00000338850 VPS54Q9P1Q0 977 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 ABCF2Q9UG63 623 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 ATRNL1Q5VV63 1379 aa12.13□□□□□ -0.47
RTN3-201ENST00000338850 A0A087X0B3 334 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.12□□□□□ -0.47
RTN3-201ENST00000338850 A0A1W2PQC6 194 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 MINDY4BA8MYZ0 360 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 ENTPD3O75355 529 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 NAA30Q147X3 362 aaPredicted RBP12.12□□□□□ -0.47
RTN3-201ENST00000338850 GRM4Q14833 912 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 TERF2Q15554 542 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 ERCC6LQ2NKX8 1250 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 ARHGAP29Q52LW3 1261 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 COBLL1Q53SF7 1204 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 NOL9Q5SY16 702 aaKnown RBP12.12□□□□□ -0.47
RTN3-201ENST00000338850 ZNF658Q5TYW1 1059 aaPredicted RBP12.12□□□□□ -0.47
RTN3-201ENST00000338850 FOXR2Q6PJQ5 311 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 TMCO3Q6UWJ1 677 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 PPFIBP1Q86W92 1011 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 DZIP1Q86YF9 867 aaKnown RBP12.12□□□□□ -0.47
RTN3-201ENST00000338850 ZNF384Q8TF68 577 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 DHX58Q96C10 678 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 CCSER1Q9C0I3 900 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 KCNH4Q9UQ05 1017 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 ADGRG1Q9Y653 693 aa12.12□□□□□ -0.47
RTN3-201ENST00000338850 HTTP42858 3142 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 CCDC151A5D8V7 595 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 M0R2N6 131 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 FANCGO15287 622 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 TLR2O60603 784 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 PLEKHA8P1O95397 391 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 BTDP43251 543 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 PPP4CP60510 307 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 BRD3Q15059 726 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 ISM2Q6H9L7 571 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 SH3BP5LQ7L8J4 393 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 SLF2Q8IX21 1173 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 CEP112Q8N8E3 955 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 IGSF22Q8N9C0 903 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 HNRNPLLQ8WVV9 542 aaKnown RBP12.11□□□□□ -0.47
RTN3-201ENST00000338850 GOLGA1Q92805 767 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 ARMC5Q96C12 935 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 AK8Q96MA6 479 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 SAMSN1Q9NSI8 373 aaKnown RBP12.11□□□□□ -0.47
RTN3-201ENST00000338850 ZNF446Q9NWS9 450 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 FHOD1Q9Y613 1164 aa12.11□□□□□ -0.47
RTN3-201ENST00000338850 V9GY48 417 aaPredicted RBP12.11□□□□□ -0.47
RTN3-201ENST00000338850 SPDYE4A6NLX3 237 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 PHF20L1A8MW92 1017 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 hCG_1984214I3L0E3 225 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 URI1O94763 535 aaPredicted RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 PNMA6AP0CW24 399 aaPredicted RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 CD44P16070 742 aaKnown RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 EEF1GP26641 437 aaKnown RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 GNG11P61952 73 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 GSTO1P78417 241 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 MECOMQ03112 1051 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 PPP2R3AQ06190 1150 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 PAK1Q13153 545 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 PTGDRQ13258 359 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 MOGSQ13724 837 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 ARHGEF6Q15052 776 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 EARS2Q5JPH6 523 aaKnown RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 SPECC1Q5M775 1068 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 RCSD1Q6JBY9 416 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 USP49Q70CQ1 688 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 ANKRD23Q86SG2 305 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 SRBD1Q8N5C6 995 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms