RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 ERCC5P28715 1186 aaPredicted RBP16.53■□□□□ 0.24
C9orf47-201ENST00000334490 ADKP55263 362 aaKnown RBP16.53■□□□□ 0.24
C9orf47-201ENST00000334490 TUBB4BP68371 445 aa16.53■□□□□ 0.24
C9orf47-201ENST00000334490 MTERF2Q49AM1 385 aa16.53■□□□□ 0.24
C9orf47-201ENST00000334490 SPATA1Q5VX52 437 aa16.53■□□□□ 0.24
C9orf47-201ENST00000334490 IQCDQ96DY2 449 aa16.53■□□□□ 0.24
C9orf47-201ENST00000334490 OTUD5Q96G74 571 aa16.53■□□□□ 0.24
C9orf47-201ENST00000334490 FAM204AQ9H8W3 233 aa16.53■□□□□ 0.24
C9orf47-201ENST00000334490 RAVER2Q9HCJ3 691 aaKnown RBP16.53■□□□□ 0.24
C9orf47-201ENST00000334490 SREK1Q8WXA9 508 aaKnown RBP16.53■□□□□ 0.24
C9orf47-201ENST00000334490 ATP2A2P16615 1042 aaKnown RBP16.52■□□□□ 0.24
C9orf47-201ENST00000334490 RCSD1Q6JBY9 416 aa16.52■□□□□ 0.24
C9orf47-201ENST00000334490 MICALL2Q8IY33 904 aa16.52■□□□□ 0.24
C9orf47-201ENST00000334490 NSUN4Q96CB9 384 aaKnown RBP16.52■□□□□ 0.24
C9orf47-201ENST00000334490 RPS6KC1Q96S38 1066 aa16.52■□□□□ 0.24
C9orf47-201ENST00000334490 CNOT7Q9UIV1 285 aaKnown RBP16.52■□□□□ 0.24
C9orf47-201ENST00000334490 RCOR1Q9UKL0 485 aa16.52■□□□□ 0.24
C9orf47-201ENST00000334490 ATF7P17544 494 aaPredicted RBP16.52■□□□□ 0.24
C9orf47-201ENST00000334490 U2AF1L4Q8WU68 220 aaKnown RBP16.52■□□□□ 0.24
C9orf47-201ENST00000334490 ZFP91Q96JP5 570 aaPredicted RBP16.52■□□□□ 0.24
C9orf47-201ENST00000334490 KMT5AQ9NQR1 393 aa16.52■□□□□ 0.24
C9orf47-201ENST00000334490 FBXO40Q9UH90 709 aa16.52■□□□□ 0.24
C9orf47-201ENST00000334490 DYNC1I1O14576 645 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 SNRNP48Q6IEG0 339 aaKnown RBP16.52■□□□□ 0.23
C9orf47-201ENST00000334490 RMDN3Q96TC7 470 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 ZBTB12Q9Y330 459 aaPredicted RBP16.52■□□□□ 0.23
C9orf47-201ENST00000334490 USP42Q9H9J4 1324 aaKnown RBP16.52■□□□□ 0.23
C9orf47-201ENST00000334490 ABCC12Q96J65 1359 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 E7EVH7 732 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 LRRC41Q15345 812 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 ZNF365Q70YC5 407 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 IFIH1Q9BYX4 1025 aaKnown RBP16.52■□□□□ 0.23
C9orf47-201ENST00000334490 GJB4Q9NTQ9 266 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 PODXL2Q9NZ53 605 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 STK17AQ9UEE5 414 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 NUB1Q9Y5A7 615 aa16.52■□□□□ 0.23
C9orf47-201ENST00000334490 GAP43P17677 238 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 CLCN1P35523 988 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 FEM1BQ9UK73 627 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 SMIM23A6NLE4 172 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 SLFN14P0C7P3 912 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 NR2F2P24468 414 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 SLC16A10Q8TF71 515 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 PSMB7Q99436 277 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 HERC5Q9UII4 1024 aaKnown RBP16.51■□□□□ 0.23
C9orf47-201ENST00000334490 DAGLAQ9Y4D2 1042 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 NCOA3Q9Y6Q9 1424 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 CEP104O60308 925 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 ABI1Q8IZP0 508 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 MED10Q9BTT4 135 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 KDM4FA0A1W2PPD8 638 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 PSAPP07602 524 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 ABCB4P21439 1286 aa16.51■□□□□ 0.23
C9orf47-201ENST00000334490 ZNF215Q9UL58 517 aaPredicted RBP16.51■□□□□ 0.23
C9orf47-201ENST00000334490 LRRIQ1Q96JM4 1722 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L15C9J2P7 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L13C9JLJ4 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L11C9JVI0 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L18D6R9N7 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L22D6RA61 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L17D6RBQ6 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L19D6RCP7 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L20D6RJB6 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 ZEB2O60315 1214 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 STAMBPO95630 424 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L24Q0WX57 530 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 TOB2Q14106 344 aaPredicted RBP16.5■□□□□ 0.23
C9orf47-201ENST00000334490 RASA3Q14644 834 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 CCDC14Q49A88 953 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 RNF187Q5TA31 235 aaPredicted RBP16.5■□□□□ 0.23
C9orf47-201ENST00000334490 USP17L6PQ6QN14 398 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 CCDC63Q8NA47 563 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 SLC17A8Q8NDX2 589 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 RIOK1Q9BRS2 568 aaKnown RBP16.5■□□□□ 0.23
C9orf47-201ENST00000334490 HESX1Q9UBX0 185 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 POLR2FP61218 127 aaKnown RBP16.5■□□□□ 0.23
C9orf47-201ENST00000334490 AP3B2Q13367 1082 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 GPT2Q8TD30 523 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 COBLO75128 1261 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 GAS8O95995 478 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 AKR1B1P15121 316 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 PEX26Q7Z412 305 aa16.5■□□□□ 0.23
C9orf47-201ENST00000334490 PDIA6Q15084 440 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 MB21D2Q8IYB1 491 aaPredicted RBP16.49■□□□□ 0.23
C9orf47-201ENST00000334490 GRAMD1CQ8IYS0 662 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 NEDD1Q8NHV4 660 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 RNF146Q9NTX7 359 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 STIM2Q9P246 746 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 PCDHA6Q9UN73 950 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 PCDHA8Q9Y5H6 950 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 RFX7Q2KHR2 1363 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 PREX1Q8TCU6 1659 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 DPEP1P16444 411 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 SH3GLB2Q9NR46 395 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 CEMIPQ8WUJ3 1361 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 OPA1O60313 960 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 FERP16591 822 aa16.49■□□□□ 0.23
C9orf47-201ENST00000334490 SMYD4Q8IYR2 804 aaPredicted RBP16.49■□□□□ 0.23
C9orf47-201ENST00000334490 PRPF38AQ8NAV1 312 aaKnown RBP16.49■□□□□ 0.23
C9orf47-201ENST00000334490 SRPRBQ9Y5M8 271 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms