RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 POTEDQ86YR6 584 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 CTAGE4Q8IX94 777 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 REXO1Q8N1G1 1221 aaKnown RBP17.96■□□□□ 0.47
USHBP1-202ENST00000324554 CNKSR1Q969H4 720 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 MMTAG2Q9BU76 263 aaKnown RBP17.96■□□□□ 0.47
USHBP1-202ENST00000324554 EXOC1Q9NV70 894 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 CALCOCO1Q9P1Z2 691 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 BIN2Q9UBW5 565 aaPredicted RBP17.96■□□□□ 0.47
USHBP1-202ENST00000324554 CAPN11Q9UMQ6 739 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 L1RE1Q9UN81 338 aa17.96■□□□□ 0.47
USHBP1-202ENST00000324554 ATF5Q9Y2D1 282 aaPredicted RBP17.96■□□□□ 0.47
USHBP1-202ENST00000324554 ESYT2A0FGR8 921 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 B4DLN1 442 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 POTEB2H3BUK9 544 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 CACNB3P54284 484 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 ASIC1P78348 528 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 SLF2Q8IX21 1173 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 P2RX5Q93086 422 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 EEF2KMTQ96G04 330 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 RIOX1Q9H6W3 641 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 PDE11AQ9HCR9 933 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 MYO6Q9UM54 1294 aa17.96■□□□□ 0.46
USHBP1-202ENST00000324554 PDHBP11177 359 aa17.95■□□□□ 0.46
USHBP1-202ENST00000324554 CCNE1P24864 410 aa17.95■□□□□ 0.46
USHBP1-202ENST00000324554 DNM2P50570 870 aa17.95■□□□□ 0.46
USHBP1-202ENST00000324554 C7orf43Q8WVR3 580 aa17.95■□□□□ 0.46
USHBP1-202ENST00000324554 TUBGCP2Q9BSJ2 902 aa17.95■□□□□ 0.46
USHBP1-202ENST00000324554 TMEM260Q9NX78 707 aa17.95■□□□□ 0.46
USHBP1-202ENST00000324554 BICDL2A1A5D9 508 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 FCER1AP12319 257 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 HERVK_113P62684 666 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 ORC2Q13416 577 aaPredicted RBP17.94■□□□□ 0.46
USHBP1-202ENST00000324554 ANKRD40Q6AI12 368 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 CCDC47Q96A33 483 aaKnown RBP17.94■□□□□ 0.46
USHBP1-202ENST00000324554 DDX4Q9NQI0 724 aaKnown RBP17.94■□□□□ 0.46
USHBP1-202ENST00000324554 PPP1R1BQ9UD71 204 aaPredicted RBP17.94■□□□□ 0.46
USHBP1-202ENST00000324554 ADAM21Q9UKJ8 722 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 PLIN4Q96Q06 1357 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 FRMPD2Q68DX3 1309 aaPredicted RBP17.94■□□□□ 0.46
USHBP1-202ENST00000324554 ENC1O14682 589 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 RBM5P52756 815 aaKnown RBP eCLIP17.94■□□□□ 0.46
USHBP1-202ENST00000324554 HDXQ7Z353 690 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 TTYH3Q9C0H2 523 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 HDAC6Q9UBN7 1215 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 FOCADQ5VW36 1801 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 ADAMTSL1Q8N6G6 1762 aa17.94■□□□□ 0.46
USHBP1-202ENST00000324554 DPEP1P16444 411 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 CNOT6LQ96LI5 555 aaKnown RBP17.93■□□□□ 0.46
USHBP1-202ENST00000324554 MTMR9Q96QG7 549 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 USP40Q9NVE5 1235 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 hCG_1984214I3L0E3 225 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 N4BP1O75113 896 aaKnown RBP17.93■□□□□ 0.46
USHBP1-202ENST00000324554 TXKP42681 527 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 AMPD3Q01432 767 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 TXLNBQ8N3L3 684 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 ZNF713Q8N859 430 aaPredicted RBP17.93■□□□□ 0.46
USHBP1-202ENST00000324554 KIAA0895Q8NCT3 520 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 MTMR4Q9NYA4 1195 aa17.93■□□□□ 0.46
USHBP1-202ENST00000324554 RASSF10A6NK89 507 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 ERLIN1O75477 346 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 PPP1R2P41236 205 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 KLK7P49862 253 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 TUBB4BP68371 445 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 MEA1Q16626 185 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 TRAPPC11Q7Z392 1133 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 PODNQ7Z5L7 613 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 CALML4Q96GE6 196 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 AGPAT5Q9NUQ2 364 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 PSMD14O00487 310 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 GABPAQ06546 454 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 GRB10Q13322 594 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 COBLL1Q53SF7 1204 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 CNNM4Q6P4Q7 775 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 LRRC47Q8N1G4 583 aaKnown RBP17.92■□□□□ 0.46
USHBP1-202ENST00000324554 HPS3Q969F9 1004 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 COA7Q96BR5 231 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 SCN9AQ15858 1988 aa17.92■□□□□ 0.46
USHBP1-202ENST00000324554 PPIP5K2O43314 1243 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 EDIL3O43854 480 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 TRIM21P19474 475 aaKnown RBP17.91■□□□□ 0.46
USHBP1-202ENST00000324554 TCP10Q12799 353 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 NFIAQ12857 509 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 CALCRLQ16602 461 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 TSR1Q2NL82 804 aaKnown RBP17.91■□□□□ 0.46
USHBP1-202ENST00000324554 ASPRV1Q53RT3 343 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 MIIPQ5JXC2 388 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 FAM114A1Q8IWE2 563 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 HAUS4Q9H6D7 363 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 BLOC1S4Q9NUP1 217 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 NKRFO15226 690 aaKnown RBP eCLIP17.91■□□□□ 0.46
USHBP1-202ENST00000324554 SLC37A4O43826 429 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 ATP1A1P05023 1023 aaKnown RBP17.91■□□□□ 0.46
USHBP1-202ENST00000324554 SNHG28P0DPA3 235 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 AKR1B1P15121 316 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 KCNA3P22001 575 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 FXR2P51116 673 aaKnown RBP eCLIP17.91■□□□□ 0.46
USHBP1-202ENST00000324554 TBC1D8BQ0IIM8 1120 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 CCDC122Q5T0U0 273 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 CDC42EP5Q6NZY7 148 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 ZFPM1Q8IX07 1006 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms