RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 ANKLE2Q86XL3 938 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 CCDC117Q8IWD4 279 aaPredicted RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 PALD1Q9ULE6 856 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 SMAD1Q15797 465 aaKnown RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 ASCC2Q9H1I8 757 aaPredicted RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 PGRMC1O00264 195 aaKnown RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 SCP2P22307 547 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 ST5P78524 1137 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 SNRPA1P09661 255 aaKnown RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 ADALQ6DHV7 355 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 PANK4Q9NVE7 773 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 DNM2P50570 870 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 RNASELQ05823 741 aaKnown RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 BTKQ06187 659 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 DMPKQ09013 629 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 SYMPKQ92797 1274 aaKnown RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 NSD2O96028 1365 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 MCF2LO15068 1137 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 SGSM2O43147 1006 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 MLH1P40692 756 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 SPOPLQ6IQ16 392 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 SESTD1Q86VW0 696 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 TOP2BQ02880 1626 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 PARD3Q8TEW0 1356 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 HMGB1P1B2RPK0 211 aaPredicted RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 LMNB1P20700 586 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 IFRD2Q12894 506 aaPredicted RBP9.47□□□□□ -0.89
USF3-201ENST00000316407 PPP2R5EQ16537 467 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 NOSTRINQ8IVI9 506 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 MAIP1Q8WWC4 291 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 IL17RAQ96F46 866 aa9.47□□□□□ -0.89
USF3-201ENST00000316407 CYTH1Q15438 398 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 ZYXQ15942 572 aaKnown RBP9.46□□□□□ -0.89
USF3-201ENST00000316407 CNGA3Q16281 694 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 ZMYND12Q9H0C1 365 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 MICAL3Q7RTP6 2002 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 ATP8B1O43520 1251 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 TECP42680 631 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 MRPL28Q13084 256 aaKnown RBP9.46□□□□□ -0.89
USF3-201ENST00000316407 HAUS4Q9H6D7 363 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 AZI2Q9H6S1 392 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 NUMA1Q14980 2115 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 IRX1P78414 480 aaPredicted RBP9.46□□□□□ -0.89
USF3-201ENST00000316407 KIF17Q9P2E2 1029 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 TPCN1Q9ULQ1 816 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 PPP1R2P41236 205 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 KIF19Q2TAC6 998 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 NSMCE1Q8WV22 266 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 ABCF3Q9NUQ8 709 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 SPDYE2BA6NHP3 402 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 NBNO60934 754 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 SPDYE6P0CI01 402 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 JDP2Q8WYK2 163 aa9.46□□□□□ -0.89
USF3-201ENST00000316407 ZNF594Q96JF6 807 aaPredicted RBP9.46□□□□□ -0.89
USF3-201ENST00000316407 CPP00450 1065 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 PIK3CAP42336 1068 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 GPKOWQ92917 476 aaPredicted RBP eCLIP9.46□□□□□ -0.9
USF3-201ENST00000316407 RIMS2Q9UQ26 1411 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 UGGT2Q9NYU1 1516 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 ECEL1O95672 775 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 CYP27A1Q02318 531 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 TEKT2Q9UIF3 430 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 AP2B1P63010 937 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 OCRLQ01968 901 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 DEPDC1BQ8WUY9 529 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 PPP1R36Q96LQ0 422 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 NHEJ1Q9H9Q4 299 aaPredicted RBP9.46□□□□□ -0.9
USF3-201ENST00000316407 CTTNBP2Q8WZ74 1663 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 NOS1P29475 1434 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 RASA4BC9J798 803 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 RASA4O43374 803 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 NT5C3AQ9H0P0 336 aa9.46□□□□□ -0.9
USF3-201ENST00000316407 ESYT3A0FGR9 886 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 GOLGA8SH3BPF8 625 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 GOLGA8MH3BSY2 632 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 TOM1O60784 492 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 VCAM1P19320 739 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 FBXL13Q8NEE6 735 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 CA4P22748 312 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 H7C0C1 242 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 ATP5OP48047 213 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 EXT2Q93063 718 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 ETNK1Q9HBU6 452 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 AFPP02771 609 aaKnown RBP9.45□□□□□ -0.9
USF3-201ENST00000316407 LDHBP07195 334 aaKnown RBP9.45□□□□□ -0.9
USF3-201ENST00000316407 FAM133AQ8N9E0 248 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 KCNH5Q8NCM2 988 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 TMEM60Q9H2L4 133 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 MT-ND3P03897 115 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 COPB1P53618 953 aaKnown RBP9.45□□□□□ -0.9
USF3-201ENST00000316407 FAM102BQ5T8I3 360 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 ARMCX3Q9UH62 379 aaPredicted RBP9.45□□□□□ -0.9
USF3-201ENST00000316407 STXBP3O00186 592 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 FOXO3O43524 673 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 E2F6O75461 281 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 BASP1P80723 227 aaKnown RBP9.45□□□□□ -0.9
USF3-201ENST00000316407 KSR2Q6VAB6 950 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 SRRM1Q8IYB3 904 aaKnown RBP9.45□□□□□ -0.9
USF3-201ENST00000316407 FAM161BQ96MY7 647 aa9.45□□□□□ -0.9
USF3-201ENST00000316407 ADGRF5Q8IZF2 1346 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms