RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 HVCN1Q96D96 273 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 ZNF131P52739 623 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 SEPT2Q15019 361 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 BUB1O43683 1085 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 ALCAMQ13740 583 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 NAA25Q14CX7 972 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 RPS6KA2Q15349 733 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 RNF26Q9BY78 433 aaPredicted RBP20.9■□□□□ 0.94
UPF1-201ENST00000262803 FAM170AA1A519 330 aa20.89■□□□□ 0.94
UPF1-201ENST00000262803 PRAMEF22A3QJZ6 481 aa20.89■□□□□ 0.94
UPF1-201ENST00000262803 LRRC47Q8N1G4 583 aaKnown RBP20.89■□□□□ 0.94
UPF1-201ENST00000262803 ANKRD36BP1Q96IX9 119 aa20.89■□□□□ 0.94
UPF1-201ENST00000262803 PPP1R13BQ96KQ4 1090 aa20.89■□□□□ 0.94
UPF1-201ENST00000262803 FTOQ9C0B1 505 aaKnown RBP eCLIP20.89■□□□□ 0.94
UPF1-201ENST00000262803 KANSL2Q9H9L4 492 aa20.89■□□□□ 0.94
UPF1-201ENST00000262803 A0A1B0GUA9 196 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 TCP10L2B9ZVM9 353 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 M0R2C6 588 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 TMEM232C9JQI7 657 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 PTK2Q05397 1052 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 ABI1Q8IZP0 508 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 TTLL1O95922 423 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 CASP14P31944 242 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 CTNNA1P35221 906 aaKnown RBP20.89■□□□□ 0.93
UPF1-201ENST00000262803 NSFP46459 744 aaKnown RBP20.89■□□□□ 0.93
UPF1-201ENST00000262803 MMS19Q96T76 1030 aa20.89■□□□□ 0.93
UPF1-201ENST00000262803 IKBKBO14920 756 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 PNMA8AQ86V59 439 aaPredicted RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 LINC00301Q8NCQ3 95 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 EEF2KMTQ96G04 330 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 ERVV-1B6SEH8 477 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 KIF3CO14782 793 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 S100BP04271 92 aaPredicted RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 H2AFZP0C0S5 128 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 H2AFVQ71UI9 128 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 ARHGEF25Q86VW2 580 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 TMEM206Q9H813 350 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 EFCAB6Q5THR3 1501 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 A6NJR5 290 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 POLR2FP61218 127 aaKnown RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 KIF23Q02241 960 aaPredicted RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 ASPHQ12797 758 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 SLC12A6Q9UHW9 1150 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 THRAP3Q9Y2W1 955 aaKnown RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 KRIT1O00522 736 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 WDR46O15213 610 aaKnown RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 RGS16O15492 202 aaPredicted RBP20.88■□□□□ 0.93
UPF1-201ENST00000262803 LARGE1O95461 756 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 FAM160B2Q86V87 743 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 UGGT1Q9NYU2 1555 aa20.88■□□□□ 0.93
UPF1-201ENST00000262803 A0A087WWV3 80 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 FMNL1O95466 1100 aaPredicted RBP20.87■□□□□ 0.93
UPF1-201ENST00000262803 DPP9Q86TI2 863 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 CCND2P30279 289 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 ARHGAP4P98171 946 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 SF3A3Q12874 501 aaKnown RBP eCLIP20.87■□□□□ 0.931e-6■■■□□ 19.1
UPF1-201ENST00000262803 PPP2R5DQ14738 602 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 NT5C1BQ96P26 610 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 PCDHA1Q9Y5I3 950 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 SLC7A3Q8WY07 619 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 NPHP4O75161 1426 aaPredicted RBP20.87■□□□□ 0.93
UPF1-201ENST00000262803 GOLGA8KD6RF30 607 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 TTC1Q99614 292 aa20.87■□□□□ 0.93
UPF1-201ENST00000262803 NFKBIAP25963 317 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 ACCSQ96QU6 501 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 TRIM56Q9BRZ2 755 aaKnown RBP20.86■□□□□ 0.93
UPF1-201ENST00000262803 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.86■□□□□ 0.93
UPF1-201ENST00000262803 ABCC12Q96J65 1359 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 PIK3CAP42336 1068 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 CDC37Q16543 378 aaPredicted RBP20.86■□□□□ 0.93
UPF1-201ENST00000262803 ANKARQ7Z5J8 1434 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 STX2P32856 288 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 GNGT1P63211 74 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 CDC23Q9UJX2 597 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 ADAM9Q13443 819 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 CCDC93Q567U6 631 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 KIAA0825Q8IV33 1275 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 ARHGEF2Q92974 986 aaKnown RBP20.86■□□□□ 0.93
UPF1-201ENST00000262803 DHTKD1Q96HY7 919 aaPredicted RBP20.86■□□□□ 0.93
UPF1-201ENST00000262803 PCDHA4Q9UN74 947 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 TTLL3Q9Y4R7 772 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 PASKQ96RG2 1323 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 USP6P35125 1406 aa20.86■□□□□ 0.93
UPF1-201ENST00000262803 PTPROQ16827 1216 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 RABGGTAQ92696 567 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 TUBGCP2Q9BSJ2 902 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 MED7O43513 233 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 CRKLP46109 303 aaKnown RBP20.85■□□□□ 0.93
UPF1-201ENST00000262803 CTAGE3PQ8IX95 158 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 ANKRD13CQ8N6S4 541 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 ESYT2A0FGR8 921 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 ADD2P35612 726 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 KPNA2P52292 529 aaKnown RBP20.85■□□□□ 0.93
UPF1-201ENST00000262803 ASAP1Q9ULH1 1129 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 MYO5CQ9NQX4 1742 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 NLRP1Q9C000 1473 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 LRRIQ4A6NIV6 560 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 POLA2Q14181 598 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 USPL1Q5W0Q7 1092 aa20.85■□□□□ 0.93
UPF1-201ENST00000262803 CNOT6LQ96LI5 555 aaKnown RBP20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms