RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 HAUS4Q9H6D7 363 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 EXOC1Q9NV70 894 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 CACNA1SQ13698 1873 aa11.21□□□□□ -0.61
LIG3-201ENST00000262327 ZNF263O14978 683 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 SLC7A5Q01650 507 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 CCDC96Q2M329 555 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 ICE2Q659A1 982 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 ARL6IP4Q66PJ3 421 aaKnown RBP11.21□□□□□ -0.62
LIG3-201ENST00000262327 USP17L2Q6R6M4 530 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 C15orf52Q6ZUT6 534 aaKnown RBP11.21□□□□□ -0.62
LIG3-201ENST00000262327 CCDC155Q8N6L0 562 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 POLD4Q9HCU8 107 aa11.21□□□□□ -0.62
LIG3-201ENST00000262327 PDS5AQ29RF7 1337 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 NAPAP54920 295 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 PPARDQ03181 441 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 MUM1L1Q5H9M0 696 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 GIMAP8Q8ND71 665 aaPredicted RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 GJA10Q969M2 543 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 NCAPGQ9BPX3 1015 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 UBA5Q9GZZ9 404 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 ZNHIT6Q9NWK9 470 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 BIN2Q9UBW5 565 aaPredicted RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 ANKRD31Q8N7Z5 1873 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 PSMD14O00487 310 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 KRT86O43790 486 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 IPO7O95373 1038 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 SYF2O95926 243 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 ALDH1B1P30837 517 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 TXKP42681 527 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 TTC19Q6DKK2 380 aaPredicted RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 TMEM260Q9NX78 707 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 MYO1AQ9UBC5 1043 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 RRP15Q9Y3B9 282 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 CAPN6Q9Y6Q1 641 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 NCK2O43639 380 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 MOCS3O95396 460 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 SRGNP10124 158 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 ATP2B4P23634 1241 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 EEF1GP26641 437 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 GGCXP38435 758 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 DNM2P50570 870 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 LRRC41Q15345 812 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 ENOX2Q16206 610 aaKnown RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 MSL1Q68DK7 614 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 C2CD5Q86YS7 1000 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 GPATCH11Q8N954 259 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 GLIS3Q8NEA6 775 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 COG1Q8WTW3 980 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 P2RX5Q93086 422 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 TMEM47Q9BQJ4 181 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 GBP3Q9H0R5 595 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 MMRN2Q9H8L6 949 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 KANSL2Q9H9L4 492 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 ATP8A2Q9NTI2 1148 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 KBTBD4Q9NVX7 518 aa11.2□□□□□ -0.62
LIG3-201ENST00000262327 ARPP21Q9UBL0 812 aaPredicted RBP11.2□□□□□ -0.62
LIG3-201ENST00000262327 KLRF2D3W0D1 207 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 STXBP3O00186 592 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 RHOBTB3O94955 611 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 TUBB2AQ13885 445 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 DNAJC21Q5F1R6 531 aaKnown RBP11.19□□□□□ -0.62
LIG3-201ENST00000262327 SP8Q8IXZ3 490 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 ZNF444Q8N0Y2 327 aaPredicted RBP11.19□□□□□ -0.62
LIG3-201ENST00000262327 MASTLQ96GX5 879 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 CCDC42Q96M95 316 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 TUBB2BQ9BVA1 445 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 TRIM9Q9C026 710 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 THAP9Q9H5L6 903 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 IRS2Q9Y4H2 1338 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 CYLC1P35663 651 aaPredicted RBP11.19□□□□□ -0.62
LIG3-201ENST00000262327 KRT83P78385 493 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 C12orf60Q5U649 245 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 LRRC31Q6UY01 552 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 POTEDQ86YR6 584 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 FAM71BQ8TC56 605 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 RRP36Q96EU6 259 aaKnown RBP11.19□□□□□ -0.62
LIG3-201ENST00000262327 EHD4Q9H223 541 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 TCP11L1Q9NUJ3 509 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 ANKIB1Q9P2G1 1089 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 HPCAL4Q9UM19 191 aa11.19□□□□□ -0.62
LIG3-201ENST00000262327 SMCO2A6NFE2 343 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 M0R2N6 131 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 EIF6P56537 245 aaKnown RBP11.18□□□□□ -0.62
LIG3-201ENST00000262327 MIIPQ5JXC2 388 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 NFRKBQ6P4R8 1299 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 SRLQ86TD4 932 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 KIAA0895Q8NCT3 520 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 PYM1Q9BRP8 204 aaKnown RBP11.18□□□□□ -0.62
LIG3-201ENST00000262327 TTYH3Q9C0H2 523 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 SEMA6BQ9H3T3 888 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 PSD3Q9NYI0 1048 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 CWC15Q9P013 229 aaKnown RBP11.18□□□□□ -0.62
LIG3-201ENST00000262327 DMGDHQ9UI17 866 aaKnown RBP11.18□□□□□ -0.62
LIG3-201ENST00000262327 LRRC37AA6NMS7 1700 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 A0A1W2PQC6 194 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 PPEF1O14829 653 aaPredicted RBP11.18□□□□□ -0.62
LIG3-201ENST00000262327 BUB1O43683 1085 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 CCNE1P24864 410 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 APBA1Q02410 837 aa11.18□□□□□ -0.62
LIG3-201ENST00000262327 KIF5AQ12840 1032 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms