RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 PFKFB2O60825 505 aa19.28■□□□□ 0.68
SDCBP-201ENST00000260130 AKAP17AQ02040 695 aaKnown RBP19.28■□□□□ 0.68
SDCBP-201ENST00000260130 PDE4DQ08499 809 aa19.28■□□□□ 0.68
SDCBP-201ENST00000260130 PFKFB3Q16875 520 aaPredicted RBP19.28■□□□□ 0.68
SDCBP-201ENST00000260130 ARHGEF16Q5VV41 709 aa19.28■□□□□ 0.68
SDCBP-201ENST00000260130 ANO1Q5XXA6 986 aa19.28■□□□□ 0.68
SDCBP-201ENST00000260130 ZNF713Q8N859 430 aaPredicted RBP19.28■□□□□ 0.68
SDCBP-201ENST00000260130 RNF26Q9BY78 433 aaPredicted RBP19.28■□□□□ 0.68
SDCBP-201ENST00000260130 MKI67P46013 3256 aaKnown RBP19.28■□□□□ 0.68
SDCBP-201ENST00000260130 CCDC144BQ3MJ40 725 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 CPLX2Q6PUV4 134 aaKnown RBP19.27■□□□□ 0.68
SDCBP-201ENST00000260130 NOL8Q76FK4 1167 aaKnown RBP19.27■□□□□ 0.68
SDCBP-201ENST00000260130 EEPD1Q7L9B9 569 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 CUL5Q93034 780 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 IWS1Q96ST2 819 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 SLC26A6Q9BXS9 759 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 BARHL2Q9NY43 387 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 LCTP09848 1927 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 PIK3CDO00329 1044 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 PPFIA3O75145 1194 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 SCG2P13521 617 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 SCRN1Q12765 414 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 USP17L6PQ6QN14 398 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 FCHSD1Q86WN1 690 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 ANKLE1Q8NAG6 615 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 VTA1Q9NP79 307 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 PXMP2Q9NR77 195 aa19.27■□□□□ 0.68
SDCBP-201ENST00000260130 MEIS2O14770 477 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 RARBP10826 455 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 MCM4P33991 863 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 NAPAP54920 295 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 PKN1Q16512 942 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 PPP1R18Q6NYC8 613 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 FBXO16Q8IX29 292 aaPredicted RBP19.26■□□□□ 0.67
SDCBP-201ENST00000260130 SMARCC2Q8TAQ2 1214 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 STXBP3O00186 592 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 EIF2AK2P19525 551 aaKnown RBP19.26■□□□□ 0.67
SDCBP-201ENST00000260130 SSRP1Q08945 709 aaKnown RBP19.26■□□□□ 0.67
SDCBP-201ENST00000260130 ME3Q16798 604 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 TYW1BQ6NUM6 668 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 TAPT1Q6NXT6 567 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 TRIM22Q8IYM9 498 aa19.26■□□□□ 0.67
SDCBP-201ENST00000260130 RABEP1Q15276 862 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 PDGFCQ9NRA1 345 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 NR3C2P08235 984 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 STXBP2Q15833 593 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 IQSEC1Q6DN90 963 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 SPRYD3Q8NCJ5 442 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 PDCD2LQ9BRP1 358 aa19.25■□□□□ 0.67
SDCBP-201ENST00000260130 CDKL5O76039 1030 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 FARP2O94887 1054 aaPredicted RBP19.24■□□□□ 0.67
SDCBP-201ENST00000260130 ADCYAP1R1P41586 468 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 TNFAIP2Q03169 654 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 ARRDC4Q8NCT1 418 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 SNX21Q969T3 373 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 XPNPEP3Q9NQH7 507 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 LIMCH1Q9UPQ0 1083 aa19.24■□□□□ 0.67
SDCBP-201ENST00000260130 SMCO2A6NFE2 343 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 ADCY6O43306 1168 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 DUSP11O75319 330 aaKnown RBP19.23■□□□□ 0.67
SDCBP-201ENST00000260130 LARGE1O95461 756 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 MNX1P50219 401 aaPredicted RBP19.23■□□□□ 0.67
SDCBP-201ENST00000260130 PGM5Q15124 567 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 UBE2Q1Q7Z7E8 422 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 TEX2Q8IWB9 1127 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 LENG1Q96BZ8 264 aaPredicted RBP19.23■□□□□ 0.67
SDCBP-201ENST00000260130 RIC8AQ9NPQ8 531 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 MCM3APO60318 1980 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.23■□□□□ 0.67
SDCBP-201ENST00000260130 UBE2SQ16763 222 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 NECAB1Q8N987 351 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 CCDC12Q8WUD4 166 aaPredicted RBP19.23■□□□□ 0.67
SDCBP-201ENST00000260130 GLT8D2Q9H1C3 349 aa19.23■□□□□ 0.67
SDCBP-201ENST00000260130 RBM47A0AV96 593 aaKnown RBP19.22■□□□□ 0.67
SDCBP-201ENST00000260130 EIF3JO75822 258 aaKnown RBP19.22■□□□□ 0.67
SDCBP-201ENST00000260130 DEXIO95424 95 aa19.22■□□□□ 0.67
SDCBP-201ENST00000260130 ADCY7P51828 1080 aa19.22■□□□□ 0.67
SDCBP-201ENST00000260130 MLLT1Q03111 559 aaPredicted RBP19.22■□□□□ 0.67
SDCBP-201ENST00000260130 VSIG10LQ86VR7 867 aa19.22■□□□□ 0.67
SDCBP-201ENST00000260130 GTF3C6Q969F1 213 aa19.22■□□□□ 0.67
SDCBP-201ENST00000260130 PAWRQ96IZ0 340 aaKnown RBP19.22■□□□□ 0.67
SDCBP-201ENST00000260130 PGK1P00558 417 aa19.22■□□□□ 0.67
SDCBP-201ENST00000260130 MYCLP12524 364 aaPredicted RBP19.22■□□□□ 0.67
SDCBP-201ENST00000260130 DIS3LQ8TF46 1054 aaKnown RBP19.22■□□□□ 0.67
SDCBP-201ENST00000260130 WDR11Q9BZH6 1224 aa19.22■□□□□ 0.67
SDCBP-201ENST00000260130 DNM1LO00429 736 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 MYCNP04198 464 aaPredicted RBP19.21■□□□□ 0.67
SDCBP-201ENST00000260130 SMPD1P17405 629 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 LRRC41Q15345 812 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 GJC2Q5T442 439 aaPredicted RBP19.21■□□□□ 0.67
SDCBP-201ENST00000260130 NECAB2Q7Z6G3 386 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 SCFD2Q8WU76 684 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 ZMYND12Q9H0C1 365 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 GNEQ9Y223 722 aaKnown RBP19.21■□□□□ 0.67
SDCBP-201ENST00000260130 FRMPD4Q14CM0 1322 aa19.21■□□□□ 0.67
SDCBP-201ENST00000260130 ESYT2A0FGR8 921 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 SPDYE3A6NKU9 549 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 CTDNEP1O95476 244 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 CCND2P30279 289 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 RNF180Q86T96 592 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms