RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 MOXD1Q6UVY6 613 aa21.47■■□□□ 1.03
YBX3-201ENST00000228251 KIAA0895Q8NCT3 520 aa21.47■■□□□ 1.03
YBX3-201ENST00000228251 CSRNP1Q96S65 589 aa21.47■■□□□ 1.03
YBX3-201ENST00000228251 MAP7D2Q96T17 732 aa21.47■■□□□ 1.03
YBX3-201ENST00000228251 KCNMB3Q9NPA1 279 aa21.47■■□□□ 1.03
YBX3-201ENST00000228251 PHLPP2Q6ZVD8 1323 aa21.47■■□□□ 1.03
YBX3-201ENST00000228251 PSMD14O00487 310 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 ZSCAN12O43309 604 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 CCNE1P24864 410 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 PPP1R2P41236 205 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 FXR1P51114 621 aaKnown RBP eCLIP21.46■■□□□ 1.03
YBX3-201ENST00000228251 NCBP1Q09161 790 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 TOGARAM2Q6ZUX3 1019 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 KCNK18Q7Z418 384 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 ZNF507Q8TCN5 953 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 NOC3LQ8WTT2 800 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 LARP4BQ92615 738 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 RAD54LQ92698 747 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 CCDC51Q96ER9 411 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 NAA15Q9BXJ9 866 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 ANO3Q9BYT9 981 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 VPS16Q9H269 839 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 EXOC1Q9NV70 894 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 BRCA1P38398 1863 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 PVALEFA0A1B0GWK0 134 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 AP3B2Q13367 1082 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 MCM6Q14566 821 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 ECM1Q16610 540 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 RBM26Q5T8P6 1007 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 SYDE2Q5VT97 1194 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 SYT10Q6XYQ8 523 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 UNC13DQ70J99 1090 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 SV2BQ7L1I2 683 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 MTERF4Q7Z6M4 381 aaKnown RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 PPFIBP1Q86W92 1011 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 P2RX5Q93086 422 aa21.46■■□□□ 1.03
YBX3-201ENST00000228251 NUP88Q99567 741 aaPredicted RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 ZNF70Q9UC06 446 aaPredicted RBP21.46■■□□□ 1.03
YBX3-201ENST00000228251 GOLGB1Q14789 3259 aaKnown RBP21.45■■□□□ 1.02
YBX3-201ENST00000228251 LGALS16A8MUM7 142 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 FCER1AP12319 257 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 SPDYE2Q495Y8 402 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 ANKRD20A12PQ8NF67 263 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 SNX29Q8TEQ0 813 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 FAM151AQ8WW52 585 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 CCDC47Q96A33 483 aaKnown RBP21.45■■□□□ 1.02
YBX3-201ENST00000228251 VPS33BQ9H267 617 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 PDCL3Q9H2J4 239 aa21.45■■□□□ 1.02
YBX3-201ENST00000228251 FER1L6Q2WGJ9 1857 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 RNF225M0QZC1 329 aaPredicted RBP21.44■■□□□ 1.02
YBX3-201ENST00000228251 OPLAHO14841 1288 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 SLC26A4O43511 780 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 CASP14P31944 242 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 KRT79Q5XKE5 535 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 CNGA4Q8IV77 575 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 MTMR14Q8NCE2 650 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 AMNQ9BXJ7 453 aa21.44■■□□□ 1.02
YBX3-201ENST00000228251 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.44■■□□□ 1.026e-8■□□□□ 9.9
YBX3-201ENST00000228251 A0A1W2PQC6 194 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 GOLGA6L9A6NEM1 432 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 BMP3P12645 472 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 DPEP1P16444 411 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 HOXA7P31268 230 aaPredicted RBP21.43■■□□□ 1.02
YBX3-201ENST00000228251 TRIM14Q14142 442 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 HSP90AA2PQ14568 343 aaPredicted RBP21.43■■□□□ 1.02
YBX3-201ENST00000228251 FKBP1CQ5VVH2 108 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 MCTP2Q6DN12 878 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 RAD9BQ6WBX8 426 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 ZBED3Q96IU2 234 aaPredicted RBP21.43■■□□□ 1.02
YBX3-201ENST00000228251 TRIM47Q96LD4 638 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 SRRTQ9BXP5 876 aaKnown RBP21.43■■□□□ 1.02
YBX3-201ENST00000228251 RAD17O75943 681 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 MTF1Q14872 753 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 ANKRD40Q6AI12 368 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 CENPPQ6IPU0 288 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 FBXO11Q86XK2 927 aa21.43■■□□□ 1.02
YBX3-201ENST00000228251 BICDL2A1A5D9 508 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 SOWAHDA6NJG2 315 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 TCP10L2B9ZVM9 353 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 KIAA1755Q5JYT7 1200 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 MB21D1Q8N884 522 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 GJA10Q969M2 543 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 SEMA6BQ9H3T3 888 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.42■■□□□ 1.024e-26■■■□□ 16.2
YBX3-201ENST00000228251 ZNF277Q9NRM2 450 aaPredicted RBP21.42■■□□□ 1.02
YBX3-201ENST00000228251 TMOD2Q9NZR1 351 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 PGAP2Q9UHJ9 254 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 ZNF215Q9UL58 517 aaPredicted RBP21.42■■□□□ 1.02
YBX3-201ENST00000228251 PCDHA12Q9UN75 941 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 ATAD5Q96QE3 1844 aa21.42■■□□□ 1.02
YBX3-201ENST00000228251 SPIRE1Q08AE8 756 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 FOXR2Q6PJQ5 311 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 LARGE2Q8N3Y3 721 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 ETNPPLQ8TBG4 499 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 HPS3Q969F9 1004 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 LENG9Q96B70 501 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 DNAJC19Q96DA6 116 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 CDK5RAP3Q96JB5 506 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 TMX2Q9Y320 296 aa21.41■■□□□ 1.02
YBX3-201ENST00000228251 ADGRG1Q9Y653 693 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms