RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 VCAM1P19320 739 aa16.77■□□□□ 0.27
CCDC47-201ENST00000225726 HOXA13P31271 388 aaPredicted RBP16.77■□□□□ 0.27
CCDC47-201ENST00000225726 Q4G0T1 1027 aa16.77■□□□□ 0.27
CCDC47-201ENST00000225726 ZNF280CQ8ND82 737 aa16.77■□□□□ 0.27
CCDC47-201ENST00000225726 STAMQ92783 540 aa16.77■□□□□ 0.27
CCDC47-201ENST00000225726 TTC12Q9H892 705 aaPredicted RBP16.77■□□□□ 0.27
CCDC47-201ENST00000225726 KCNMB3Q9NPA1 279 aa16.77■□□□□ 0.27
CCDC47-201ENST00000225726 MARCH6O60337 910 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 CYP3A4P08684 503 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 BACE1P56817 501 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 CUL4BQ13620 913 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 SAMD1Q6SPF0 538 aaPredicted RBP16.76■□□□□ 0.27
CCDC47-201ENST00000225726 TANGO6Q9C0B7 1094 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 PRDM10Q9NQV6 1147 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 KBTBD4Q9NVX7 518 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 RMND1Q9NWS8 449 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 CIITAP33076 1130 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 SPP2Q13103 211 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 BLZF1Q9H2G9 400 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 POLR2AP24928 1970 aaKnown RBP16.76■□□□□ 0.27
CCDC47-201ENST00000225726 SMCHD1A6NHR9 2005 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 GOLGA6L6A8MZA4 724 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 ESPNB1AK53 854 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 ZSCAN30Q86W11 494 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 SLFN12Q8IYM2 578 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 MRFAP1L1Q96HT8 127 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 EHMT1Q9H9B1 1298 aa16.76■□□□□ 0.27
CCDC47-201ENST00000225726 PARP14Q460N5 1801 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 CFBP00751 764 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 DCPSQ96C86 337 aaKnown RBP16.75■□□□□ 0.27
CCDC47-201ENST00000225726 PLIN2Q99541 437 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 RPAP3Q9H6T3 665 aaPredicted RBP16.75■□□□□ 0.27
CCDC47-201ENST00000225726 CCPG1Q9ULG6 757 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 PPP1R9AQ9ULJ8 1098 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 ZNF536O15090 1300 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 TBX3O15119 743 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 RPN1P04843 607 aaKnown RBP16.75■□□□□ 0.27
CCDC47-201ENST00000225726 C12orf42Q96LP6 360 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 SLC26A4O43511 780 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 ERCC5P28715 1186 aaPredicted RBP16.75■□□□□ 0.27
CCDC47-201ENST00000225726 SEMA3FQ13275 785 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 DGKZQ13574 1117 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 KRT79Q5XKE5 535 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 LRRC15Q8TF66 581 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 SLC38A10Q9HBR0 1119 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 STK17AQ9UEE5 414 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 PNMA2Q9UL42 364 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 PCDHA12Q9UN75 941 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 FZD1Q9UP38 647 aa16.75■□□□□ 0.27
CCDC47-201ENST00000225726 POTEMA6NI47 508 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 C19orf81C9J6K1 198 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 FLOT1O75955 427 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 FDX1P10109 184 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 GRB10Q13322 594 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.74■□□□□ 0.278e-19■■□□□ 13.9
CCDC47-201ENST00000225726 TPM3P06753 285 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 FCHSD1Q86WN1 690 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 ETNPPLQ8TBG4 499 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 ENOX1Q8TC92 643 aaKnown RBP16.74■□□□□ 0.27
CCDC47-201ENST00000225726 CDK5RAP3Q96JB5 506 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 L3MBTL3Q96JM7 780 aaPredicted RBP16.74■□□□□ 0.27
CCDC47-201ENST00000225726 AGBL1Q96MI9 1066 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 ZHX2Q9Y6X8 837 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 RBBP6Q7Z6E9 1792 aaKnown RBP16.74■□□□□ 0.27
CCDC47-201ENST00000225726 PAPPA2Q9BXP8 1791 aa16.74■□□□□ 0.27
CCDC47-201ENST00000225726 DPY19L2Q6NUT2 758 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 SNX29Q8TEQ0 813 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 PNMA5Q96PV4 448 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 HSD3B7Q9H2F3 369 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 USP2O75604 605 aaPredicted RBP16.73■□□□□ 0.27
CCDC47-201ENST00000225726 PRR16Q569H4 304 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 SULF1Q8IWU6 871 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 TBC1D5Q92609 795 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 ZBED4O75132 1171 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 HSD17B4P51659 736 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 KCNB1Q14721 858 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 TMEM119Q4V9L6 283 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 SPC24Q8NBT2 197 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 LENG9Q96B70 501 aa16.73■□□□□ 0.27
CCDC47-201ENST00000225726 AMPD3Q01432 767 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 FMR1Q06787 632 aaKnown RBP eCLIP16.72■□□□□ 0.27
CCDC47-201ENST00000225726 DRC7Q8IY82 874 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 FAM20AQ96MK3 541 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 KDM3AQ9Y4C1 1321 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 FAM86B1E9PN63 330 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 FAM86B2P0C5J1 330 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 GHRHRQ02643 423 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 ZNF658Q5TYW1 1059 aaPredicted RBP16.72■□□□□ 0.27
CCDC47-201ENST00000225726 MCF2L2Q86YR7 1114 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 C7orf25Q9BPX7 421 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 ZKSCAN5Q9Y2L8 839 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 CTDP1Q9Y5B0 961 aaPredicted RBP16.72■□□□□ 0.27
CCDC47-201ENST00000225726 ZNF76P36508 570 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 HYIQ5T013 277 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 USP50Q70EL3 339 aaPredicted RBP16.72■□□□□ 0.27
CCDC47-201ENST00000225726 SAMD3Q8N6K7 520 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 WDR90Q96KV7 1748 aa16.72■□□□□ 0.27
CCDC47-201ENST00000225726 PPP1R3GB7ZBB8 358 aa16.71■□□□□ 0.27
CCDC47-201ENST00000225726 CD44P16070 742 aaKnown RBP16.71■□□□□ 0.27
CCDC47-201ENST00000225726 CLEC4DQ8WXI8 215 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms