RNA–Protein interactions for RNA: ENST00000193403.10

ACTN1-201, Transcript of actinin alpha 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ACTN1, Length 3,779 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-201ENST00000193403 MSL1Q68DK7 614 aa12.36□□□□□ -0.43
ACTN1-201ENST00000193403 KSR1Q8IVT5 923 aa12.36□□□□□ -0.43
ACTN1-201ENST00000193403 STAG2Q8N3U4 1231 aa12.36□□□□□ -0.43
ACTN1-201ENST00000193403 RNPC3Q96LT9 517 aaKnown RBP12.36□□□□□ -0.43
ACTN1-201ENST00000193403 THAP9Q9H5L6 903 aa12.36□□□□□ -0.43
ACTN1-201ENST00000193403 WDR17Q8IZU2 1322 aa12.36□□□□□ -0.43
ACTN1-201ENST00000193403 KLHL30Q0D2K2 578 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 DCAF17Q5H9S7 520 aaPredicted RBP12.35□□□□□ -0.43
ACTN1-201ENST00000193403 WDR59Q6PJI9 974 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 ADGRA1Q86SQ6 560 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 CCDC170Q8IYT3 715 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 PIGBQ92521 554 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 TBC1D5Q92609 795 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 MTRQ99707 1265 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 NDST4Q9H3R1 872 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 ADAMTS1Q9UHI8 967 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 ABCC6O95255 1503 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 TARSL2A2RTX5 802 aaKnown RBP12.35□□□□□ -0.43
ACTN1-201ENST00000193403 WTIPA6NIX2 430 aaPredicted RBP12.35□□□□□ -0.43
ACTN1-201ENST00000193403 PALMO75781 387 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 TXNRD1Q16881 649 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 NBPF5PQ86XG9 351 aaPredicted RBP12.35□□□□□ -0.43
ACTN1-201ENST00000193403 KAT2BQ92831 832 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 PLAAQ9Y263 795 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 ADAMTSL3P82987 1691 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 CHD2O14647 1828 aaKnown RBP12.35□□□□□ -0.43
ACTN1-201ENST00000193403 TCRBV5S4A2TA0A5A2 114 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 USP17L3A6NCW0 530 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 USP17L4A6NCW7 530 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 USP17L8P0C7I0 530 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 PDXDC2PQ6P474 469 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 USP17L1Q7RTZ2 530 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 SNX29Q8TEQ0 813 aa12.35□□□□□ -0.43
ACTN1-201ENST00000193403 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.35□□□□□ -0.432e-13■■■■■ 158.6
ACTN1-201ENST00000193403 ANO9A1A5B4 782 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 CSF1RP07333 972 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 HDLBPQ00341 1268 aaKnown RBP12.34□□□□□ -0.43
ACTN1-201ENST00000193403 PPP2R5BQ15173 497 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 SFMBT2Q5VUG0 894 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 PAPD7Q5XG87 772 aaKnown RBP12.34□□□□□ -0.43
ACTN1-201ENST00000193403 DDX42Q86XP3 938 aaKnown RBP eCLIP12.34□□□□□ -0.43
ACTN1-201ENST00000193403 TNS3Q68CZ2 1445 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 PRPF6O94906 941 aaKnown RBP12.34□□□□□ -0.43
ACTN1-201ENST00000193403 CCDC172P0C7W6 258 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 SRGNP10124 158 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 EMBQ6PCB8 327 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 ARFGAP2Q8N6H7 521 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 CERKQ8TCT0 537 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 LRRC37A3O60309 1634 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 OR52Z1P0C646 297 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 FAM153BP0C7A2 387 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 EZRP15311 586 aaKnown RBP12.34□□□□□ -0.43
ACTN1-201ENST00000193403 CLNS1AP54105 237 aaKnown RBP12.34□□□□□ -0.43
ACTN1-201ENST00000193403 LLGL1Q15334 1064 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 RPS6KA1Q15418 735 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 FAM153CQ494X1 144 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 SUSD4Q5VX71 490 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 SH3RF1Q7Z6J0 888 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 FAM133AQ8N9E0 248 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 CXorf56Q9H5V9 222 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 FAM153AQ9UHL3 310 aa12.34□□□□□ -0.43
ACTN1-201ENST00000193403 KRT13P13646 458 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 TMOD1P28289 359 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 LSP1P33241 339 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 ELOA2Q8IYF1 753 aaPredicted RBP12.33□□□□□ -0.43
ACTN1-201ENST00000193403 KIRREL3Q8IZU9 778 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 SLC44A5Q8NCS7 719 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 SPATA20Q8TB22 786 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 N4BP2L2Q92802 583 aaPredicted RBP12.33□□□□□ -0.43
ACTN1-201ENST00000193403 DHTKD1Q96HY7 919 aaPredicted RBP12.33□□□□□ -0.43
ACTN1-201ENST00000193403 DNAJC7Q99615 494 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 PPP1R1BQ9UD71 204 aaPredicted RBP12.33□□□□□ -0.43
ACTN1-201ENST00000193403 FAM205AQ6ZU69 1335 aa12.33□□□□□ -0.43
ACTN1-201ENST00000193403 SMCO2A6NFE2 343 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 AGPSO00116 658 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 ADAMTS3O15072 1205 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 AARSP49588 968 aaKnown RBP eCLIP12.33□□□□□ -0.44
ACTN1-201ENST00000193403 NONOQ15233 471 aaKnown RBP eCLIP12.33□□□□□ -0.44
ACTN1-201ENST00000193403 KRT79Q5XKE5 535 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 CCDC84Q86UT8 332 aaPredicted RBP12.33□□□□□ -0.44
ACTN1-201ENST00000193403 CCDC25Q86WR0 208 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 PCDHA4Q9UN74 947 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 NOVA2Q9UNW9 492 aaKnown RBP12.33□□□□□ -0.44
ACTN1-201ENST00000193403 A0A1W2PQC6 194 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 TMEM110-MUSTN1A8MSY1 372 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 DDAH1O94760 285 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 IL17AQ16552 155 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 TTMPQ5BVD1 217 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 IRF2BP1Q8IU81 584 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 MAPKAPK5Q8IW41 473 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 BANK1Q8NDB2 785 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 SH2D4AQ9H788 454 aa12.33□□□□□ -0.44
ACTN1-201ENST00000193403 SETD1AO15047 1707 aaKnown RBP12.33□□□□□ -0.44
ACTN1-201ENST00000193403 MEFVO15553 781 aaPredicted RBP12.32□□□□□ -0.44
ACTN1-201ENST00000193403 GLI1P08151 1106 aa12.32□□□□□ -0.44
ACTN1-201ENST00000193403 VIMP08670 466 aaKnown RBP12.32□□□□□ -0.44
ACTN1-201ENST00000193403 IFNAR2P48551 515 aa12.32□□□□□ -0.44
ACTN1-201ENST00000193403 TROAPQ12815 778 aa12.32□□□□□ -0.44
ACTN1-201ENST00000193403 PPP1R7Q15435 360 aa12.32□□□□□ -0.44
ACTN1-201ENST00000193403 VWA3BQ502W6 1294 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms