RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 SPDYE3A6NKU9 549 aa16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 H7C1D1 291 aa16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 NOLC1Q14978 699 aaKnown RBP eCLIP16.09■□□□□ 0.172e-9■■□□□ 13.8
RTFDC1-201ENST00000023939 USH1GQ495M9 461 aa16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 TBC1D10BQ4KMP7 808 aaPredicted RBP16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 TRMT44Q8IYL2 757 aaKnown RBP16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 GLIS2Q9BZE0 524 aaPredicted RBP16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 BLOC1S4Q9NUP1 217 aa16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 PCDHA12Q9UN75 941 aa16.09■□□□□ 0.17
RTFDC1-201ENST00000023939 WDR46O15213 610 aaKnown RBP16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 KMT5BQ4FZB7 885 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 COBLL1Q53SF7 1204 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 DCAF15Q66K64 600 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 APOBEC3FQ8IUX4 373 aaKnown RBP16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 VSTM4Q8IW00 320 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 CCDC150Q8NCX0 1101 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 GIMAP8Q8ND71 665 aaPredicted RBP16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 CCDC47Q96A33 483 aaKnown RBP16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 ZNF341Q9BYN7 854 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 ZNF112Q9UJU3 913 aa16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 MRPL11Q9Y3B7 192 aaKnown RBP16.08■□□□□ 0.17
RTFDC1-201ENST00000023939 ABCB11O95342 1321 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 ATAD5Q96QE3 1844 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 PPP1R2P41236 205 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 LRMPQ12912 555 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 FILIP1Q7Z7B0 1213 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 SMYD4Q8IYR2 804 aaPredicted RBP16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 ADSSL1Q8N142 457 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 ETNPPLQ8TBG4 499 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 NAP1L5Q96NT1 182 aaPredicted RBP16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 PLIN2Q99541 437 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 LRRC27Q9C0I9 530 aa16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 SAMSN1Q9NSI8 373 aaKnown RBP16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.08■□□□□ 0.16
RTFDC1-201ENST00000023939 ASTN2O75129 1339 aaPredicted RBP16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 POTEMA6NI47 508 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 LMNB1P20700 586 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 PAK1Q13153 545 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 SV2BQ7L1I2 683 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 TMC6Q7Z403 805 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 GPC2Q8N158 579 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 SNX29Q8TEQ0 813 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 KIFC2Q96AC6 838 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 LENG9Q96B70 501 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 CDK5RAP3Q96JB5 506 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 FAM20AQ96MK3 541 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 FEZ1Q99689 392 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 INTS13Q9NVM9 706 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 GPRC5DQ9NZD1 345 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 PPP2R3BQ9Y5P8 575 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 STK24Q9Y6E0 443 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 KDM3AQ9Y4C1 1321 aa16.07■□□□□ 0.16
RTFDC1-201ENST00000023939 A0A1B0GTH6 734 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 PVALEFA0A1B0GWK0 134 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 MARCH6O60337 910 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 CDK11BP21127 795 aaKnown RBP16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 PRCPP42785 496 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 KLHL10Q6JEL2 608 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 APTXQ7Z2E3 356 aaKnown RBP16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 LARP4BQ92615 738 aaKnown RBP16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 RAD54LQ92698 747 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 WDR18Q9BV38 432 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 NT5C3AQ9H0P0 336 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 SPON1Q9HCB6 807 aa16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 DICER1Q9UPY3 1922 aaKnown RBP16.06■□□□□ 0.16
RTFDC1-201ENST00000023939 LRRC10BA6NIK2 292 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 GCOM1H8Y6P7 765 aaPredicted RBP16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 ICAM1P05362 532 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 POLR2MP0CAP2 368 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 GHRHRQ02643 423 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 SPAG1Q07617 926 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 STIM1Q13586 685 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 NR1I3Q14994 352 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 ZYXQ15942 572 aaKnown RBP16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 NBPF12Q5TAG4 269 aaPredicted RBP16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 PRPF38AQ8NAV1 312 aaKnown RBP16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 NELFBQ8WX92 580 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 DHTKD1Q96HY7 919 aaPredicted RBP16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 CTAGE1Q96RT6 745 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 NUDT12Q9BQG2 462 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 PNMA2Q9UL42 364 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 CTNND2Q9UQB3 1225 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 GDAQ9Y2T3 454 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 INPP5BP32019 993 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 STX17P56962 302 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 CCZ1BP86790 482 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 CCZ1P86791 482 aaPredicted RBP16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 SPIRE1Q08AE8 756 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 LDHDQ86WU2 507 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 SLF1Q9BQI6 1058 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 EHMT1Q9H9B1 1298 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 KCND1Q9NSA2 647 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 FBXO28Q9NVF7 368 aa16.05■□□□□ 0.16
RTFDC1-201ENST00000023939 FAM86B1E9PN63 330 aa16.04■□□□□ 0.16
RTFDC1-201ENST00000023939 PSMA7O14818 248 aa16.04■□□□□ 0.16
RTFDC1-201ENST00000023939 FAM86B2P0C5J1 330 aa16.04■□□□□ 0.16
RTFDC1-201ENST00000023939 HOXA13P31271 388 aaPredicted RBP16.04■□□□□ 0.16
RTFDC1-201ENST00000023939 KCNJ6P48051 423 aa16.04■□□□□ 0.16
RTFDC1-201ENST00000023939 USP14P54578 494 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms