RNA–Protein interactions for RNA: ENST00000638680.1

SCARB2-213, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 5,817 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-213ENST00000638680 TULP1O00294 542 aaPredicted RBP23.53■■□□□ 1.36
SCARB2-213ENST00000638680 VPS8Q8N3P4 1428 aa23.52■■□□□ 1.35
SCARB2-213ENST00000638680 DRC7Q8IY82 874 aa23.51■■□□□ 1.35
SCARB2-213ENST00000638680 IPO9Q96P70 1041 aaKnown RBP23.51■■□□□ 1.35
SCARB2-213ENST00000638680 FOXD1Q16676 465 aa23.51■■□□□ 1.35
SCARB2-213ENST00000638680 KANK4Q5T7N3 995 aaPredicted RBP23.5■■□□□ 1.35
SCARB2-213ENST00000638680 GBP4Q96PP9 640 aa23.49■■□□□ 1.35
SCARB2-213ENST00000638680 ARHGAP35Q9NRY4 1499 aa23.48■■□□□ 1.35
SCARB2-213ENST00000638680 HAP1P54257 671 aaPredicted RBP23.48■■□□□ 1.35
SCARB2-213ENST00000638680 RAB3GAP2Q9H2M9 1393 aa23.47■■□□□ 1.35
SCARB2-213ENST00000638680 CFAP44Q96MT7 982 aa23.45■■□□□ 1.34
SCARB2-213ENST00000638680 APBB1O00213 710 aa23.44■■□□□ 1.34
SCARB2-213ENST00000638680 PTMSP20962 102 aa23.43■■□□□ 1.34
SCARB2-213ENST00000638680 CARMIL1Q5VZK9 1371 aa23.43■■□□□ 1.34
SCARB2-213ENST00000638680 RALBP1Q15311 655 aa23.43■■□□□ 1.34
SCARB2-213ENST00000638680 RWDD1Q9H446 243 aaPredicted RBP23.43■■□□□ 1.34
SCARB2-213ENST00000638680 LMOD2Q6P5Q4 547 aa23.43■■□□□ 1.34
SCARB2-213ENST00000638680 PKD2Q13563 968 aa23.42■■□□□ 1.34
SCARB2-213ENST00000638680 ARID3AQ99856 593 aa23.42■■□□□ 1.34
SCARB2-213ENST00000638680 AMER1Q5JTC6 1135 aaPredicted RBP23.42■■□□□ 1.34
SCARB2-213ENST00000638680 SRPK2P78362 688 aaKnown RBP23.42■■□□□ 1.34
SCARB2-213ENST00000638680 EIF4G1Q04637 1599 aaKnown RBP23.41■■□□□ 1.34
SCARB2-213ENST00000638680 GOLGA6L3A6NEY3 463 aa23.4■■□□□ 1.34
SCARB2-213ENST00000638680 ITPRIPQ8IWB1 547 aa23.4■■□□□ 1.34
SCARB2-213ENST00000638680 IPO8O15397 1037 aaKnown RBP23.4■■□□□ 1.34
SCARB2-213ENST00000638680 SAFB2Q14151 953 aaKnown RBP eCLIP23.38■■□□□ 1.33
SCARB2-213ENST00000638680 MFAP1P55081 439 aaKnown RBP23.37■■□□□ 1.33
SCARB2-213ENST00000638680 CUX2O14529 1486 aa23.36■■□□□ 1.33
SCARB2-213ENST00000638680 SOX12O15370 315 aa23.36■■□□□ 1.33
SCARB2-213ENST00000638680 KIAA2012Q0VF49 1180 aa23.36■■□□□ 1.33
SCARB2-213ENST00000638680 ROCK2O75116 1388 aaKnown RBP23.36■■□□□ 1.33
SCARB2-213ENST00000638680 KANK1Q14678 1352 aa23.36■■□□□ 1.33
SCARB2-213ENST00000638680 BAZ1AQ9NRL2 1556 aaPredicted RBP23.36■■□□□ 1.33
SCARB2-213ENST00000638680 MPHOSPH9Q99550 1183 aa23.35■■□□□ 1.33
SCARB2-213ENST00000638680 PMFBP1Q8TBY8 1022 aa23.33■■□□□ 1.33
SCARB2-213ENST00000638680 CECR2Q9BXF3 1484 aa23.33■■□□□ 1.33
SCARB2-213ENST00000638680 NACADO15069 1562 aa23.31■■□□□ 1.32
SCARB2-213ENST00000638680 U2AF1L5P0DN76 240 aaPredicted RBP23.31■■□□□ 1.32
SCARB2-213ENST00000638680 U2AF1Q01081 240 aaKnown RBP eCLIP23.31■■□□□ 1.32
SCARB2-213ENST00000638680 ABCC8Q09428 1581 aa23.3■■□□□ 1.32
SCARB2-213ENST00000638680 KIAA1211Q6ZU35 1233 aa23.3■■□□□ 1.32
SCARB2-213ENST00000638680 RTF1Q92541 710 aaKnown RBP23.29■■□□□ 1.32
SCARB2-213ENST00000638680 GOLGA2Q08379 1002 aa23.28■■□□□ 1.32
SCARB2-213ENST00000638680 SYAP1Q96A49 352 aaPredicted RBP23.26■■□□□ 1.31
SCARB2-213ENST00000638680 FOXD4L1Q9NU39 408 aa23.24■■□□□ 1.31
SCARB2-213ENST00000638680 GNL2Q13823 731 aaKnown RBP23.24■■□□□ 1.31
SCARB2-213ENST00000638680 STK26Q9P289 416 aa23.23■■□□□ 1.31
SCARB2-213ENST00000638680 CCDC88BA6NC98 1476 aa23.23■■□□□ 1.31
SCARB2-213ENST00000638680 CCDC146Q8IYE0 955 aa23.23■■□□□ 1.31
SCARB2-213ENST00000638680 NPHP1O15259 732 aa23.23■■□□□ 1.31
SCARB2-213ENST00000638680 HDGFL2Q7Z4V5 671 aaPredicted RBP23.22■■□□□ 1.31
SCARB2-213ENST00000638680 SMC4Q9NTJ3 1288 aa23.22■■□□□ 1.31
SCARB2-213ENST00000638680 L3MBTL2Q969R5 705 aa23.21■■□□□ 1.31
SCARB2-213ENST00000638680 CALD1Q05682 793 aaKnown RBP23.21■■□□□ 1.31
SCARB2-213ENST00000638680 CLUAP1Q96AJ1 413 aa23.21■■□□□ 1.31
SCARB2-213ENST00000638680 PDE3BQ13370 1112 aa23.2■■□□□ 1.3
SCARB2-213ENST00000638680 NUP155O75694 1391 aa23.19■■□□□ 1.3
SCARB2-213ENST00000638680 FMN1Q68DA7 1419 aa23.18■■□□□ 1.3
SCARB2-213ENST00000638680 NLRP13Q86W25 1043 aa23.18■■□□□ 1.3
SCARB2-213ENST00000638680 CENPJQ9HC77 1338 aaPredicted RBP23.17■■□□□ 1.3
SCARB2-213ENST00000638680 USP35Q9P2H5 1018 aa23.17■■□□□ 1.3
SCARB2-213ENST00000638680 SLC4A3P48751 1232 aa23.15■■□□□ 1.3
SCARB2-213ENST00000638680 PDE4AP27815 886 aa23.15■■□□□ 1.3
SCARB2-213ENST00000638680 HTATSF1O43719 755 aaKnown RBP23.15■■□□□ 1.3
SCARB2-213ENST00000638680 NOL8Q76FK4 1167 aaKnown RBP23.13■■□□□ 1.29
SCARB2-213ENST00000638680 TRIM6-TRIM34B2RNG4 842 aa23.12■■□□□ 1.29
SCARB2-213ENST00000638680 GSE1Q14687 1217 aa23.11■■□□□ 1.29
SCARB2-213ENST00000638680 GGT6Q6P531 493 aa23.1■■□□□ 1.29
SCARB2-213ENST00000638680 ANKRD30AQ9BXX3 1397 aa23.1■■□□□ 1.29
SCARB2-213ENST00000638680 EIF3AQ14152 1382 aaKnown RBP23.1■■□□□ 1.29
SCARB2-213ENST00000638680 HDGFP51858 240 aaKnown RBP23.09■■□□□ 1.29
SCARB2-213ENST00000638680 DDX11L8A8MPP1 907 aa23.09■■□□□ 1.29
SCARB2-213ENST00000638680 FAM161AQ3B820 660 aa23.09■■□□□ 1.29
SCARB2-213ENST00000638680 DHX57Q6P158 1386 aaKnown RBP23.09■■□□□ 1.29
SCARB2-213ENST00000638680 CENPQQ7L2Z9 268 aaPredicted RBP23.08■■□□□ 1.29
SCARB2-213ENST00000638680 HSP90AA2PQ14568 343 aaPredicted RBP23.08■■□□□ 1.29
SCARB2-213ENST00000638680 KIF15Q9NS87 1388 aa23.08■■□□□ 1.29
SCARB2-213ENST00000638680 PLIN1O60240 522 aa23.08■■□□□ 1.29
SCARB2-213ENST00000638680 EXOC6Q8TAG9 804 aa23.08■■□□□ 1.29
SCARB2-213ENST00000638680 RSPH6AQ9H0K4 717 aa23.08■■□□□ 1.29
SCARB2-213ENST00000638680 MLECQ14165 292 aa23.08■■□□□ 1.28
SCARB2-213ENST00000638680 MYBBP1AQ9BQG0 1328 aaKnown RBP23.07■■□□□ 1.28
SCARB2-213ENST00000638680 TPM4P67936 248 aa23.07■■□□□ 1.28
SCARB2-213ENST00000638680 ERCC6Q03468 1493 aa23.06■■□□□ 1.28
SCARB2-213ENST00000638680 FOXD4L5Q5VV16 416 aaPredicted RBP23.06■■□□□ 1.28
SCARB2-213ENST00000638680 FOXD4L4Q8WXT5 416 aaPredicted RBP23.06■■□□□ 1.28
SCARB2-213ENST00000638680 HSP90B1P14625 803 aaKnown RBP23.06■■□□□ 1.28
SCARB2-213ENST00000638680 HMMRO75330 724 aa23.05■■□□□ 1.28
SCARB2-213ENST00000638680 PHLDB1Q86UU1 1377 aa23.05■■□□□ 1.28
SCARB2-213ENST00000638680 CSPP1Q1MSJ5 1256 aa23.05■■□□□ 1.28
SCARB2-213ENST00000638680 STK31Q9BXU1 1019 aa23.05■■□□□ 1.28
SCARB2-213ENST00000638680 FANCIQ9NVI1 1328 aa23.05■■□□□ 1.28
SCARB2-213ENST00000638680 RRP1P56182 461 aaKnown RBP23.04■■□□□ 1.28
SCARB2-213ENST00000638680 MROH2BQ7Z745 1585 aa23.04■■□□□ 1.28
SCARB2-213ENST00000638680 CLSTN1O94985 981 aa23.04■■□□□ 1.28
SCARB2-213ENST00000638680 TNNT3P45378 269 aaPredicted RBP23.04■■□□□ 1.28
SCARB2-213ENST00000638680 ST18O60284 1047 aa23.03■■□□□ 1.28
SCARB2-213ENST00000638680 SLC4A10Q6U841 1118 aa23.02■■□□□ 1.28
SCARB2-213ENST00000638680 PHF14O94880 888 aa23.02■■□□□ 1.27
SCARB2-213ENST00000638680 CRBNQ96SW2 442 aa23.02■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms