RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 YEATS2Q9ULM3 1422 aa5.75□□□□□ -1.49
SCN1A-214ENST00000637038 YTHDC1Q96MU7 727 aaKnown RBP5.75□□□□□ -1.49
SCN1A-214ENST00000637038 TDRD9Q8NDG6 1382 aaKnown RBP5.75□□□□□ -1.49
SCN1A-214ENST00000637038 PTPRKQ15262 1439 aa5.75□□□□□ -1.49
SCN1A-214ENST00000637038 HECW1Q76N89 1606 aa5.74□□□□□ -1.49
SCN1A-214ENST00000637038 PTPN23Q9H3S7 1636 aa5.74□□□□□ -1.49
SCN1A-214ENST00000637038 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.74□□□□□ -1.49
SCN1A-214ENST00000637038 SHROOM2Q13796 1616 aa5.74□□□□□ -1.49
SCN1A-214ENST00000637038 ABCC2Q92887 1545 aa5.73□□□□□ -1.49
SCN1A-214ENST00000637038 RANGAP1P46060 587 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-214ENST00000637038 RAD54L2Q9Y4B4 1467 aa5.73□□□□□ -1.49
SCN1A-214ENST00000637038 UGGT2Q9NYU1 1516 aa5.73□□□□□ -1.49
SCN1A-214ENST00000637038 KIF13AQ9H1H9 1805 aa5.72□□□□□ -1.49
SCN1A-214ENST00000637038 PKD2Q13563 968 aa5.72□□□□□ -1.49
SCN1A-214ENST00000637038 CROCC2H7BZ55 1655 aa5.72□□□□□ -1.49
SCN1A-214ENST00000637038 UHRF1BP1Q6BDS2 1440 aa5.72□□□□□ -1.49
SCN1A-214ENST00000637038 CASKIN1Q8WXD9 1431 aa5.71□□□□□ -1.49
SCN1A-214ENST00000637038 TCOF1Q13428 1488 aaKnown RBP5.71□□□□□ -1.49
SCN1A-214ENST00000637038 ADAMTS12P58397 1594 aa5.71□□□□□ -1.49
SCN1A-214ENST00000637038 MSH5O43196 834 aa5.71□□□□□ -1.5
SCN1A-214ENST00000637038 MIER1Q8N108 512 aa5.71□□□□□ -1.5
SCN1A-214ENST00000637038 CNTLNQ9NXG0 1405 aa5.71□□□□□ -1.5
SCN1A-214ENST00000637038 MAGI2Q86UL8 1455 aa5.71□□□□□ -1.5
SCN1A-214ENST00000637038 PTPRMP28827 1452 aa5.7□□□□□ -1.5
SCN1A-214ENST00000637038 NEO1Q92859 1461 aa5.7□□□□□ -1.5
SCN1A-214ENST00000637038 CCNB3Q8WWL7 1395 aa5.7□□□□□ -1.5
SCN1A-214ENST00000637038 ADCY10Q96PN6 1610 aa5.7□□□□□ -1.5
SCN1A-214ENST00000637038 CFAP74Q9C0B2 1584 aa5.7□□□□□ -1.5
SCN1A-214ENST00000637038 WDR7Q9Y4E6 1490 aa5.69□□□□□ -1.5
SCN1A-214ENST00000637038 UBAP1LF5GYI3 381 aa5.69□□□□□ -1.5
SCN1A-214ENST00000637038 SUPT6HQ7KZ85 1726 aaKnown RBP5.69□□□□□ -1.5
SCN1A-214ENST00000637038 UACAQ9BZF9 1416 aa5.68□□□□□ -1.5
SCN1A-214ENST00000637038 RAB3GAP2Q9H2M9 1393 aa5.68□□□□□ -1.5
SCN1A-214ENST00000637038 ASXL2Q76L83 1435 aa5.68□□□□□ -1.5
SCN1A-214ENST00000637038 CD109Q6YHK3 1445 aa5.68□□□□□ -1.5
SCN1A-214ENST00000637038 ARAP3Q8WWN8 1544 aa5.68□□□□□ -1.5
SCN1A-214ENST00000637038 CARMIL1Q5VZK9 1371 aa5.67□□□□□ -1.5
SCN1A-214ENST00000637038 EPRSP07814 1512 aaKnown RBP5.67□□□□□ -1.5
SCN1A-214ENST00000637038 CDC42BPAQ5VT25 1732 aa5.66□□□□□ -1.5
SCN1A-214ENST00000637038 E9PCH4 1651 aa5.66□□□□□ -1.5
SCN1A-214ENST00000637038 HFM1A2PYH4 1435 aa5.65□□□□□ -1.51
SCN1A-214ENST00000637038 DNMT1P26358 1616 aaKnown RBP5.65□□□□□ -1.51
SCN1A-214ENST00000637038 EHBP1L1Q8N3D4 1523 aa5.65□□□□□ -1.51
SCN1A-214ENST00000637038 FHOD3Q2V2M9 1422 aa5.65□□□□□ -1.51
SCN1A-214ENST00000637038 ADGBQ8N7X0 1667 aa5.65□□□□□ -1.51
SCN1A-214ENST00000637038 NEFLP07196 543 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 NAIPQ13075 1403 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 FGD6Q6ZV73 1430 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 CPS1P31327 1500 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 BCORL1Q5H9F3 1711 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 SETD5Q9C0A6 1442 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 NCOA2Q15596 1464 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 DISP1Q96F81 1524 aa5.64□□□□□ -1.51
SCN1A-214ENST00000637038 TIMELESSQ9UNS1 1208 aa5.63□□□□□ -1.51
SCN1A-214ENST00000637038 MBD5Q9P267 1494 aa5.63□□□□□ -1.51
SCN1A-214ENST00000637038 KIAA0556O60303 1618 aa5.63□□□□□ -1.51
SCN1A-214ENST00000637038 CDK11AQ9UQ88 783 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-214ENST00000637038 ITGAEP38570 1179 aa5.63□□□□□ -1.51
SCN1A-214ENST00000637038 EIF5BO60841 1220 aaKnown RBP5.62□□□□□ -1.51
SCN1A-214ENST00000637038 PPP1R15AO75807 674 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-214ENST00000637038 ZNF772Q68DY9 489 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-214ENST00000637038 ILDR2Q71H61 639 aa5.62□□□□□ -1.51
SCN1A-214ENST00000637038 CCDC125Q86Z20 511 aa5.62□□□□□ -1.51
SCN1A-214ENST00000637038 IQGAP2Q13576 1575 aa5.62□□□□□ -1.51
SCN1A-214ENST00000637038 ZRANB1Q9UGI0 708 aa5.62□□□□□ -1.51
SCN1A-214ENST00000637038 PLEKHG5O94827 1062 aa5.61□□□□□ -1.51
SCN1A-214ENST00000637038 FAM50AQ14320 339 aaKnown RBP5.61□□□□□ -1.51
SCN1A-214ENST00000637038 LTBP4Q8N2S1 1624 aa5.6□□□□□ -1.51
SCN1A-214ENST00000637038 KCNH8Q96L42 1107 aa5.6□□□□□ -1.51
SCN1A-214ENST00000637038 ATP1B4Q9UN42 357 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-214ENST00000637038 KCNA4P22459 653 aa5.6□□□□□ -1.51
SCN1A-214ENST00000637038 TSPOAP1O95153 1857 aa5.6□□□□□ -1.51
SCN1A-214ENST00000637038 SETD1BQ9UPS6 1966 aaKnown RBP5.6□□□□□ -1.51
SCN1A-214ENST00000637038 SPATA31E1Q6ZUB1 1445 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 CCDC18Q5T9S5 1454 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 KIF14Q15058 1648 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 MAP3K4Q9Y6R4 1608 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 ADAMTSL3P82987 1691 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 RAPGEF6Q8TEU7 1601 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 MYOM3Q5VTT5 1437 aa5.59□□□□□ -1.51
SCN1A-214ENST00000637038 MYT1LQ9UL68 1186 aa5.58□□□□□ -1.52
SCN1A-214ENST00000637038 PREX1Q8TCU6 1659 aa5.58□□□□□ -1.52
SCN1A-214ENST00000637038 ANP32CO43423 234 aa5.58□□□□□ -1.52
SCN1A-214ENST00000637038 NCBP3Q53F19 620 aaKnown RBP5.58□□□□□ -1.52
SCN1A-214ENST00000637038 CDK13Q14004 1512 aaKnown RBP5.58□□□□□ -1.52
SCN1A-214ENST00000637038 CDC42BPBQ9Y5S2 1711 aa5.58□□□□□ -1.52
SCN1A-214ENST00000637038 ABCA8O94911 1581 aa5.57□□□□□ -1.52
SCN1A-214ENST00000637038 NPATQ14207 1427 aa5.57□□□□□ -1.52
SCN1A-214ENST00000637038 NUP153P49790 1475 aaKnown RBP5.57□□□□□ -1.52
SCN1A-214ENST00000637038 KDM5CP41229 1560 aa5.57□□□□□ -1.52
SCN1A-214ENST00000637038 PCDH10Q9P2E7 1040 aa5.57□□□□□ -1.52
SCN1A-214ENST00000637038 KDM5DQ9BY66 1539 aa5.57□□□□□ -1.52
SCN1A-214ENST00000637038 FMN1Q68DA7 1419 aa5.57□□□□□ -1.52
SCN1A-214ENST00000637038 MYO5CQ9NQX4 1742 aa5.56□□□□□ -1.52
SCN1A-214ENST00000637038 ITSN2Q9NZM3 1697 aa5.56□□□□□ -1.52
SCN1A-214ENST00000637038 SF3B2Q13435 895 aaKnown RBP5.56□□□□□ -1.52
SCN1A-214ENST00000637038 TONSLQ96HA7 1378 aa5.56□□□□□ -1.52
SCN1A-214ENST00000637038 PZPP20742 1482 aa5.56□□□□□ -1.52
SCN1A-214ENST00000637038 PLA2R1Q13018 1463 aa5.56□□□□□ -1.52
SCN1A-214ENST00000637038 SUPT16HQ9Y5B9 1047 aaKnown RBP5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms