RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ITSN2Q9NZM3 1697 aa22.66■■□□□ 1.22
CLN3-251ENST00000636853 CAMSAP2Q08AD1 1489 aa22.63■■□□□ 1.21
CLN3-251ENST00000636853 ZNF777Q9ULD5 760 aaPredicted RBP22.63■■□□□ 1.21
CLN3-251ENST00000636853 ERCC6L2Q5T890 1561 aa22.63■■□□□ 1.21
CLN3-251ENST00000636853 TRIM52Q96A61 297 aa22.61■■□□□ 1.21
CLN3-251ENST00000636853 ROCK1Q13464 1354 aa22.6■■□□□ 1.21
CLN3-251ENST00000636853 TIMELESSQ9UNS1 1208 aa22.59■■□□□ 1.21
CLN3-251ENST00000636853 ABCC10Q5T3U5 1492 aa22.58■■□□□ 1.21
CLN3-251ENST00000636853 CDC42BPAQ5VT25 1732 aa22.58■■□□□ 1.2
CLN3-251ENST00000636853 MIER1Q8N108 512 aa22.57■■□□□ 1.2
CLN3-251ENST00000636853 SCAF1Q9H7N4 1312 aaKnown RBP22.57■■□□□ 1.2
CLN3-251ENST00000636853 DENND4BO75064 1496 aaPredicted RBP22.54■■□□□ 1.2
CLN3-251ENST00000636853 CLASP1Q7Z460 1538 aa22.54■■□□□ 1.2
CLN3-251ENST00000636853 PPP1R15AO75807 674 aaPredicted RBP22.53■■□□□ 1.2
CLN3-251ENST00000636853 TONSLQ96HA7 1378 aa22.52■■□□□ 1.2
CLN3-251ENST00000636853 MPHOSPH9Q99550 1183 aa22.51■■□□□ 1.19
CLN3-251ENST00000636853 CROCC2H7BZ55 1655 aa22.49■■□□□ 1.19
CLN3-251ENST00000636853 ADGBQ8N7X0 1667 aa22.48■■□□□ 1.19
CLN3-251ENST00000636853 NCOA1Q15788 1441 aa22.47■■□□□ 1.19
CLN3-251ENST00000636853 ABCC2Q92887 1545 aa22.47■■□□□ 1.19
CLN3-251ENST00000636853 FOXD1Q16676 465 aa22.45■■□□□ 1.18
CLN3-251ENST00000636853 ADGRL2O95490 1459 aa22.43■■□□□ 1.18
CLN3-251ENST00000636853 CDC42BPBQ9Y5S2 1711 aa22.41■■□□□ 1.18
CLN3-251ENST00000636853 ANKRD30AQ9BXX3 1397 aa22.4■■□□□ 1.18
CLN3-251ENST00000636853 HNRNPMP52272 730 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-251ENST00000636853 ACIN1Q9UKV3 1341 aaKnown RBP22.39■■□□□ 1.18
CLN3-251ENST00000636853 PREX2Q70Z35 1606 aa22.39■■□□□ 1.17
CLN3-251ENST00000636853 SLC4A1APQ9BWU0 796 aaKnown RBP22.38■■□□□ 1.17
CLN3-251ENST00000636853 C9orf84Q5VXU9 1444 aa22.37■■□□□ 1.17
CLN3-251ENST00000636853 KDM5BQ9UGL1 1544 aa22.37■■□□□ 1.17
CLN3-251ENST00000636853 TTC37Q6PGP7 1564 aa22.37■■□□□ 1.17
CLN3-251ENST00000636853 SAMD9LQ8IVG5 1584 aa22.37■■□□□ 1.17
CLN3-251ENST00000636853 HIRIP3Q9BW71 556 aaPredicted RBP22.36■■□□□ 1.17
CLN3-251ENST00000636853 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.36■■□□□ 1.17
CLN3-251ENST00000636853 SHANK2Q9UPX8 1470 aa22.36■■□□□ 1.17
CLN3-251ENST00000636853 KCNH8Q96L42 1107 aa22.36■■□□□ 1.17
CLN3-251ENST00000636853 TSPY4P0CV99 314 aa22.35■■□□□ 1.17
CLN3-251ENST00000636853 TSPY10P0CW01 314 aa22.35■■□□□ 1.17
CLN3-251ENST00000636853 YTHDC1Q96MU7 727 aaKnown RBP22.34■■□□□ 1.17
CLN3-251ENST00000636853 MBD5Q9P267 1494 aa22.34■■□□□ 1.17
CLN3-251ENST00000636853 ZCCHC11Q5TAX3 1644 aaKnown RBP22.34■■□□□ 1.17
CLN3-251ENST00000636853 PZPP20742 1482 aa22.33■■□□□ 1.17
CLN3-251ENST00000636853 ANKRD30BQ9BXX2 1392 aa22.33■■□□□ 1.17
CLN3-251ENST00000636853 ANKRD50Q9ULJ7 1429 aa22.33■■□□□ 1.17
CLN3-251ENST00000636853 ARHGEF5Q12774 1597 aa22.33■■□□□ 1.16
CLN3-251ENST00000636853 UHRF1BP1LA0JNW5 1464 aa22.32■■□□□ 1.16
CLN3-251ENST00000636853 ARHGAP5Q13017 1502 aa22.31■■□□□ 1.16
CLN3-251ENST00000636853 CENPBP07199 599 aaPredicted RBP22.31■■□□□ 1.16
CLN3-251ENST00000636853 CCDC141Q6ZP82 1450 aa22.28■■□□□ 1.16
CLN3-251ENST00000636853 MYO5CQ9NQX4 1742 aa22.28■■□□□ 1.16
CLN3-251ENST00000636853 L3MBTL2Q969R5 705 aa22.27■■□□□ 1.16
CLN3-251ENST00000636853 SYCP2Q9BX26 1530 aa22.27■■□□□ 1.16
CLN3-251ENST00000636853 KIF15Q9NS87 1388 aa22.26■■□□□ 1.15
CLN3-251ENST00000636853 RPRD2Q5VT52 1461 aaKnown RBP22.26■■□□□ 1.15
CLN3-251ENST00000636853 DDX10Q13206 875 aaKnown RBP22.26■■□□□ 1.15
CLN3-251ENST00000636853 RSPH4AQ5TD94 716 aa22.23■■□□□ 1.15
CLN3-251ENST00000636853 PKD2Q13563 968 aa22.22■■□□□ 1.15
CLN3-251ENST00000636853 NUP155O75694 1391 aa22.21■■□□□ 1.15
CLN3-251ENST00000636853 MYT1Q01538 1121 aa22.21■■□□□ 1.15
CLN3-251ENST00000636853 KIAA1107Q9UPP5 1409 aa22.21■■□□□ 1.15
CLN3-251ENST00000636853 PLCH2O75038 1416 aa22.19■■□□□ 1.14
CLN3-251ENST00000636853 TEX14Q8IWB6 1497 aa22.18■■□□□ 1.14
CLN3-251ENST00000636853 PLEKHH2Q8IVE3 1493 aa22.16■■□□□ 1.14
CLN3-251ENST00000636853 ARHGEF12Q9NZN5 1544 aa22.16■■□□□ 1.14
CLN3-251ENST00000636853 OSCARQ8IYS5 282 aa22.15■■□□□ 1.14
CLN3-251ENST00000636853 MAST1Q9Y2H9 1570 aa22.14■■□□□ 1.14
CLN3-251ENST00000636853 EFCAB2Q5VUJ9 269 aa22.14■■□□□ 1.14
CLN3-251ENST00000636853 KDM5DQ9BY66 1539 aa22.14■■□□□ 1.13
CLN3-251ENST00000636853 NBPF8Q3BBV2 869 aa22.13■■□□□ 1.13
CLN3-251ENST00000636853 HSPA5P11021 654 aaKnown RBP22.11■■□□□ 1.13
CLN3-251ENST00000636853 WDR7Q9Y4E6 1490 aa22.11■■□□□ 1.13
CLN3-251ENST00000636853 ABCC1P33527 1531 aa22.08■■□□□ 1.13
CLN3-251ENST00000636853 EIF4G2P78344 907 aaKnown RBP eCLIP22.07■■□□□ 1.121e-9■■■■□ 22.4
CLN3-251ENST00000636853 PLXNC1O60486 1568 aa22.07■■□□□ 1.12
CLN3-251ENST00000636853 TRAPPC8Q9Y2L5 1435 aa22.06■■□□□ 1.12
CLN3-251ENST00000636853 FAM135AQ9P2D6 1515 aa22.05■■□□□ 1.12
CLN3-251ENST00000636853 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.03■■□□□ 1.12
CLN3-251ENST00000636853 GTF3C3Q9Y5Q9 886 aa22.02■■□□□ 1.12
CLN3-251ENST00000636853 ASXL2Q76L83 1435 aa22.02■■□□□ 1.12
CLN3-251ENST00000636853 ARAP3Q8WWN8 1544 aa22.01■■□□□ 1.11
CLN3-251ENST00000636853 UNC13BO14795 1591 aa22.01■■□□□ 1.11
CLN3-251ENST00000636853 DUOX2Q9NRD8 1548 aa22.01■■□□□ 1.11
CLN3-251ENST00000636853 AFAP1Q8N556 730 aa22■■□□□ 1.11
CLN3-251ENST00000636853 WASHC2AQ641Q2 1341 aa21.99■■□□□ 1.11
CLN3-251ENST00000636853 ABCA9Q8IUA7 1624 aa21.99■■□□□ 1.11
CLN3-251ENST00000636853 ZNF326Q5BKZ1 582 aaKnown RBP21.99■■□□□ 1.11
CLN3-251ENST00000636853 FANCAO15360 1455 aa21.97■■□□□ 1.11
CLN3-251ENST00000636853 SPAG9O60271 1321 aaKnown RBP21.97■■□□□ 1.11
CLN3-251ENST00000636853 ANP32CO43423 234 aa21.96■■□□□ 1.11
CLN3-251ENST00000636853 ERBINQ96RT1 1412 aa21.95■■□□□ 1.1
CLN3-251ENST00000636853 NPM1P06748 294 aaKnown RBP eCLIP21.95■■□□□ 1.1
CLN3-251ENST00000636853 C11orf95C9JLR9 678 aaPredicted RBP21.94■■□□□ 1.1
CLN3-251ENST00000636853 IQGAP3Q86VI3 1631 aa21.93■■□□□ 1.1
CLN3-251ENST00000636853 SPATA31E1Q6ZUB1 1445 aa21.92■■□□□ 1.1
CLN3-251ENST00000636853 ZFYVE16Q7Z3T8 1539 aa21.91■■□□□ 1.1
CLN3-251ENST00000636853 RTEL1-TNFRSF6BF6WH68 1400 aa21.9■■□□□ 1.1
CLN3-251ENST00000636853 MAGI2Q86UL8 1455 aa21.9■■□□□ 1.1
CLN3-251ENST00000636853 KDM2AQ9Y2K7 1162 aa21.9■■□□□ 1.1
CLN3-251ENST00000636853 ADGRL1O94910 1474 aa21.89■■□□□ 1.09
CLN3-251ENST00000636853 SCAPERQ9BY12 1400 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms