RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 CARD11Q9BXL7 1154 aa7.02□□□□□ -1.28
SCN1A-209ENST00000635750 PTMSP20962 102 aa7.02□□□□□ -1.29
SCN1A-209ENST00000635750 SRPK2P78362 688 aaKnown RBP7.02□□□□□ -1.29
SCN1A-209ENST00000635750 HDAC5Q9UQL6 1122 aa7.01□□□□□ -1.29
SCN1A-209ENST00000635750 CFDP1Q9UEE9 299 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-209ENST00000635750 CTDP1Q9Y5B0 961 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-209ENST00000635750 CALD1Q05682 793 aaKnown RBP7.01□□□□□ -1.29
SCN1A-209ENST00000635750 CHMP3Q9Y3E7 222 aa7.01□□□□□ -1.29
SCN1A-209ENST00000635750 FRAT2O75474 233 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-209ENST00000635750 MLECQ14165 292 aa7.01□□□□□ -1.29
SCN1A-209ENST00000635750 GTF2E1P29083 439 aaPredicted RBP7□□□□□ -1.29
SCN1A-209ENST00000635750 RGS3P49796 1198 aa7□□□□□ -1.29
SCN1A-209ENST00000635750 CWC22Q9HCG8 908 aaKnown RBP7□□□□□ -1.29
SCN1A-209ENST00000635750 TRIM34Q9BYJ4 488 aa7□□□□□ -1.29
SCN1A-209ENST00000635750 SYAP1Q96A49 352 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-209ENST00000635750 HSP90B1P14625 803 aaKnown RBP6.99□□□□□ -1.29
SCN1A-209ENST00000635750 CSPP1Q1MSJ5 1256 aa6.99□□□□□ -1.29
SCN1A-209ENST00000635750 HDGFL2Q7Z4V5 671 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-209ENST00000635750 IPO8O15397 1037 aaKnown RBP6.99□□□□□ -1.29
SCN1A-209ENST00000635750 CREBRFQ8IUR6 639 aa6.98□□□□□ -1.29
SCN1A-209ENST00000635750 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-209ENST00000635750 SPAG9O60271 1321 aaKnown RBP6.98□□□□□ -1.29
SCN1A-209ENST00000635750 TPM3P06753 285 aa6.98□□□□□ -1.29
SCN1A-209ENST00000635750 AEBP2Q6ZN18 517 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-209ENST00000635750 TMF1P82094 1093 aa6.98□□□□□ -1.29
SCN1A-209ENST00000635750 TNNT3P45378 269 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-209ENST00000635750 TSR1Q2NL82 804 aaKnown RBP6.98□□□□□ -1.29
SCN1A-209ENST00000635750 TPM2P07951 284 aa6.97□□□□□ -1.29
SCN1A-209ENST00000635750 AMER1Q5JTC6 1135 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-209ENST00000635750 CC2D1BQ5T0F9 858 aaKnown RBP6.97□□□□□ -1.29
SCN1A-209ENST00000635750 HIRIP3Q9BW71 556 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-209ENST00000635750 AMOTL1Q8IY63 956 aa6.97□□□□□ -1.29
SCN1A-209ENST00000635750 SETQ01105 290 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-209ENST00000635750 NOL10Q9BSC4 688 aaKnown RBP6.96□□□□□ -1.29
SCN1A-209ENST00000635750 MORC1Q86VD1 984 aa6.96□□□□□ -1.3
SCN1A-209ENST00000635750 FBXO3Q9UK99 471 aa6.96□□□□□ -1.3
SCN1A-209ENST00000635750 TPD52L1Q16890 204 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-209ENST00000635750 MSH5O43196 834 aa6.96□□□□□ -1.3
SCN1A-209ENST00000635750 GBP4Q96PP9 640 aa6.95□□□□□ -1.3
SCN1A-209ENST00000635750 KIF3AQ9Y496 699 aa6.95□□□□□ -1.3
SCN1A-209ENST00000635750 MEX3CQ5U5Q3 659 aaKnown RBP6.95□□□□□ -1.3
SCN1A-209ENST00000635750 ANO8Q9HCE9 1232 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-209ENST00000635750 CLIP1P30622 1438 aa6.95□□□□□ -1.3
SCN1A-209ENST00000635750 STK31Q9BXU1 1019 aa6.95□□□□□ -1.3
SCN1A-209ENST00000635750 WWC1Q8IX03 1113 aa6.94□□□□□ -1.3
SCN1A-209ENST00000635750 PES1O00541 588 aaKnown RBP6.94□□□□□ -1.3
SCN1A-209ENST00000635750 CCDC70Q6NSX1 233 aa6.94□□□□□ -1.3
SCN1A-209ENST00000635750 TOMM22Q9NS69 142 aa6.94□□□□□ -1.3
SCN1A-209ENST00000635750 EID1Q9Y6B2 187 aa6.94□□□□□ -1.3
SCN1A-209ENST00000635750 APBB1O00213 710 aa6.94□□□□□ -1.3
SCN1A-209ENST00000635750 AKAP17AQ02040 695 aaKnown RBP6.94□□□□□ -1.3
SCN1A-209ENST00000635750 ZCCHC6Q5VYS8 1495 aaKnown RBP6.94□□□□□ -1.3
SCN1A-209ENST00000635750 CHMP4CQ96CF2 233 aa6.93□□□□□ -1.3
SCN1A-209ENST00000635750 EVA1CP58658 441 aa6.93□□□□□ -1.3
SCN1A-209ENST00000635750 TRIM6-TRIM34B2RNG4 842 aa6.93□□□□□ -1.3
SCN1A-209ENST00000635750 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCN1A-209ENST00000635750 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-209ENST00000635750 TPM1P09493 284 aa6.92□□□□□ -1.3
SCN1A-209ENST00000635750 PHF23Q9BUL5 403 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-209ENST00000635750 STK26Q9P289 416 aa6.92□□□□□ -1.3
SCN1A-209ENST00000635750 PHF14O94880 888 aa6.92□□□□□ -1.3
SCN1A-209ENST00000635750 SAFB2Q14151 953 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-209ENST00000635750 HMMRO75330 724 aa6.92□□□□□ -1.3
SCN1A-209ENST00000635750 SF3A1Q15459 793 aaKnown RBP6.92□□□□□ -1.3
SCN1A-209ENST00000635750 LRRFIP1Q32MZ4 808 aaKnown RBP6.92□□□□□ -1.3
SCN1A-209ENST00000635750 SPRYD3Q8NCJ5 442 aa6.92□□□□□ -1.3
SCN1A-209ENST00000635750 CCDC43Q96MW1 224 aaKnown RBP6.91□□□□□ -1.3
SCN1A-209ENST00000635750 SUPT16HQ9Y5B9 1047 aaKnown RBP6.91□□□□□ -1.3
SCN1A-209ENST00000635750 RRP12Q5JTH9 1297 aaKnown RBP6.91□□□□□ -1.3
SCN1A-209ENST00000635750 RAD21O60216 631 aa6.9□□□□□ -1.3
SCN1A-209ENST00000635750 NOP58Q9Y2X3 529 aaKnown RBP6.9□□□□□ -1.3
SCN1A-209ENST00000635750 SENP3-EIF4A1A0A087X0R7 540 aa6.9□□□□□ -1.3
SCN1A-209ENST00000635750 PPP4R2Q9NY27 417 aa6.9□□□□□ -1.3
SCN1A-209ENST00000635750 WWC2Q6AWC2 1192 aa6.9□□□□□ -1.3
SCN1A-209ENST00000635750 SYNE3Q6ZMZ3 975 aa6.9□□□□□ -1.3
SCN1A-209ENST00000635750 R3HCC1Q9Y3T6 440 aaKnown RBP6.9□□□□□ -1.3
SCN1A-209ENST00000635750 KIF16BQ96L93 1317 aa6.9□□□□□ -1.3
SCN1A-209ENST00000635750 CCDC47Q96A33 483 aaKnown RBP6.9□□□□□ -1.31
SCN1A-209ENST00000635750 CALRP27797 417 aaKnown RBP6.9□□□□□ -1.31
SCN1A-209ENST00000635750 ODF2Q5BJF6 829 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 DCAF11Q8TEB1 546 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 FOXD1Q16676 465 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 ITPRIPQ8IWB1 547 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 H3BQV1 296 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 IFFO2Q5TF58 517 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 CCNB3Q8WWL7 1395 aa6.89□□□□□ -1.31
SCN1A-209ENST00000635750 NGDNQ8NEJ9 315 aaKnown RBP6.88□□□□□ -1.31
SCN1A-209ENST00000635750 VPS37DQ86XT2 251 aa6.88□□□□□ -1.31
SCN1A-209ENST00000635750 GGT6Q6P531 493 aa6.88□□□□□ -1.31
SCN1A-209ENST00000635750 RWDD1Q9H446 243 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-209ENST00000635750 EIF4G1Q04637 1599 aaKnown RBP6.88□□□□□ -1.31
SCN1A-209ENST00000635750 AMPHP49418 695 aa6.88□□□□□ -1.31
SCN1A-209ENST00000635750 KLHL34Q8N239 644 aa6.88□□□□□ -1.31
SCN1A-209ENST00000635750 GPS2Q13227 327 aa6.88□□□□□ -1.31
SCN1A-209ENST00000635750 EIF3AQ14152 1382 aaKnown RBP6.88□□□□□ -1.31
SCN1A-209ENST00000635750 LMOD3Q0VAK6 560 aa6.87□□□□□ -1.31
SCN1A-209ENST00000635750 FBXW7Q969H0 707 aa6.87□□□□□ -1.31
SCN1A-209ENST00000635750 ANKRD20A12PQ8NF67 263 aa6.87□□□□□ -1.31
SCN1A-209ENST00000635750 RTN4Q9NQC3 1192 aaKnown RBP6.87□□□□□ -1.31
SCN1A-209ENST00000635750 PCMTD1Q96MG8 357 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms