RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 ARHGAP5Q13017 1502 aa22.54■■□□□ 1.2
LIMS3-206ENST00000631420 TRHP20396 242 aaPredicted RBP22.54■■□□□ 1.2
LIMS3-206ENST00000631420 CDC42BPBQ9Y5S2 1711 aa22.53■■□□□ 1.2
LIMS3-206ENST00000631420 PREX2Q70Z35 1606 aa22.52■■□□□ 1.2
LIMS3-206ENST00000631420 ITSN2Q9NZM3 1697 aa22.52■■□□□ 1.2
LIMS3-206ENST00000631420 MYO5CQ9NQX4 1742 aa22.52■■□□□ 1.19
LIMS3-206ENST00000631420 PTPN23Q9H3S7 1636 aa22.5■■□□□ 1.19
LIMS3-206ENST00000631420 MAP3K4Q9Y6R4 1608 aa22.5■■□□□ 1.19
LIMS3-206ENST00000631420 TCOF1Q13428 1488 aaKnown RBP22.5■■□□□ 1.19
LIMS3-206ENST00000631420 ITGAEP38570 1179 aa22.49■■□□□ 1.19
LIMS3-206ENST00000631420 FANCAO15360 1455 aa22.48■■□□□ 1.19
LIMS3-206ENST00000631420 KIF13AQ9H1H9 1805 aa22.48■■□□□ 1.19
LIMS3-206ENST00000631420 HNRNPMP52272 730 aaKnown RBP eCLIP22.48■■□□□ 1.19
LIMS3-206ENST00000631420 PCGF6Q9BYE7 350 aa22.48■■□□□ 1.19
LIMS3-206ENST00000631420 ARAP3Q8WWN8 1544 aa22.48■■□□□ 1.19
LIMS3-206ENST00000631420 CAMSAP2Q08AD1 1489 aa22.47■■□□□ 1.19
LIMS3-206ENST00000631420 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.47■■□□□ 1.19
LIMS3-206ENST00000631420 SAMD9LQ8IVG5 1584 aa22.45■■□□□ 1.18
LIMS3-206ENST00000631420 AKNAQ7Z591 1439 aa22.43■■□□□ 1.18
LIMS3-206ENST00000631420 ARHGEF12Q9NZN5 1544 aa22.42■■□□□ 1.18
LIMS3-206ENST00000631420 MBD5Q9P267 1494 aa22.4■■□□□ 1.18
LIMS3-206ENST00000631420 TSPOAP1O95153 1857 aa22.4■■□□□ 1.18
LIMS3-206ENST00000631420 PTPRKQ15262 1439 aa22.39■■□□□ 1.17
LIMS3-206ENST00000631420 KIAA1107Q9UPP5 1409 aa22.39■■□□□ 1.17
LIMS3-206ENST00000631420 PPRC1Q5VV67 1664 aaKnown RBP22.39■■□□□ 1.17
LIMS3-206ENST00000631420 ABCC5O15440 1437 aa22.38■■□□□ 1.17
LIMS3-206ENST00000631420 SCAPERQ9BY12 1400 aa22.38■■□□□ 1.17
LIMS3-206ENST00000631420 NEO1Q92859 1461 aa22.38■■□□□ 1.17
LIMS3-206ENST00000631420 ADGRL1O94910 1474 aa22.37■■□□□ 1.17
LIMS3-206ENST00000631420 PLEKHH2Q8IVE3 1493 aa22.37■■□□□ 1.17
LIMS3-206ENST00000631420 SYCP2Q9BX26 1530 aa22.37■■□□□ 1.17
LIMS3-206ENST00000631420 CHIC2Q9UKJ5 165 aa22.36■■□□□ 1.17
LIMS3-206ENST00000631420 ABCC1P33527 1531 aa22.36■■□□□ 1.17
LIMS3-206ENST00000631420 DAPK1P53355 1430 aa22.35■■□□□ 1.17
LIMS3-206ENST00000631420 TRAPPC8Q9Y2L5 1435 aa22.35■■□□□ 1.17
LIMS3-206ENST00000631420 AFAP1Q8N556 730 aa22.35■■□□□ 1.17
LIMS3-206ENST00000631420 TEX14Q8IWB6 1497 aa22.35■■□□□ 1.17
LIMS3-206ENST00000631420 RSPH4AQ5TD94 716 aa22.33■■□□□ 1.17
LIMS3-206ENST00000631420 CFAP74Q9C0B2 1584 aa22.31■■□□□ 1.16
LIMS3-206ENST00000631420 RAPGEF3O95398 923 aa22.31■■□□□ 1.16
LIMS3-206ENST00000631420 TSPY4P0CV99 314 aa22.31■■□□□ 1.16
LIMS3-206ENST00000631420 TSPY10P0CW01 314 aa22.31■■□□□ 1.16
LIMS3-206ENST00000631420 DNMT1P26358 1616 aaKnown RBP22.31■■□□□ 1.16
LIMS3-206ENST00000631420 CCDC141Q6ZP82 1450 aa22.3■■□□□ 1.16
LIMS3-206ENST00000631420 ARHGEF5Q12774 1597 aa22.29■■□□□ 1.16
LIMS3-206ENST00000631420 DENND4BO75064 1496 aaPredicted RBP22.27■■□□□ 1.16
LIMS3-206ENST00000631420 COL17A1Q9UMD9 1497 aaPredicted RBP22.26■■□□□ 1.15
LIMS3-206ENST00000631420 RRP7BPQ9NSQ0 103 aa22.25■■□□□ 1.15
LIMS3-206ENST00000631420 C9orf84Q5VXU9 1444 aa22.24■■□□□ 1.15
LIMS3-206ENST00000631420 POGZQ7Z3K3 1410 aa22.24■■□□□ 1.15
LIMS3-206ENST00000631420 SPAG9O60271 1321 aaKnown RBP22.24■■□□□ 1.15
LIMS3-206ENST00000631420 ZNF518AQ6AHZ1 1483 aa22.22■■□□□ 1.15
LIMS3-206ENST00000631420 SHANK2Q9UPX8 1470 aa22.21■■□□□ 1.15
LIMS3-206ENST00000631420 MYT1LQ9UL68 1186 aa22.21■■□□□ 1.15
LIMS3-206ENST00000631420 NCOA1Q15788 1441 aa22.19■■□□□ 1.14
LIMS3-206ENST00000631420 CROCC2H7BZ55 1655 aa22.19■■□□□ 1.14
LIMS3-206ENST00000631420 ROCK1Q13464 1354 aa22.19■■□□□ 1.14
LIMS3-206ENST00000631420 ANKRD30AQ9BXX3 1397 aa22.17■■□□□ 1.14
LIMS3-206ENST00000631420 ADGRL2O95490 1459 aa22.17■■□□□ 1.14
LIMS3-206ENST00000631420 RTEL1-TNFRSF6BF6WH68 1400 aa22.16■■□□□ 1.14
LIMS3-206ENST00000631420 FRMPD1Q5SYB0 1578 aa22.16■■□□□ 1.14
LIMS3-206ENST00000631420 MAST1Q9Y2H9 1570 aa22.16■■□□□ 1.14
LIMS3-206ENST00000631420 KDM5CP41229 1560 aa22.15■■□□□ 1.14
LIMS3-206ENST00000631420 NAIPQ13075 1403 aa22.15■■□□□ 1.14
LIMS3-206ENST00000631420 RICTORQ6R327 1708 aa22.14■■□□□ 1.14
LIMS3-206ENST00000631420 MLH3Q9UHC1 1453 aa22.13■■□□□ 1.13
LIMS3-206ENST00000631420 HFM1A2PYH4 1435 aa22.13■■□□□ 1.13
LIMS3-206ENST00000631420 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
LIMS3-206ENST00000631420 ZFYVE16Q7Z3T8 1539 aa22.13■■□□□ 1.13
LIMS3-206ENST00000631420 KIF15Q9NS87 1388 aa22.12■■□□□ 1.13
LIMS3-206ENST00000631420 ATP7AQ04656 1500 aa22.11■■□□□ 1.13
LIMS3-206ENST00000631420 INO80Q9ULG1 1556 aaPredicted RBP22.1■■□□□ 1.13
LIMS3-206ENST00000631420 YEATS2Q9ULM3 1422 aa22.09■■□□□ 1.13
LIMS3-206ENST00000631420 KIDINS220Q9ULH0 1771 aa22.08■■□□□ 1.13
LIMS3-206ENST00000631420 ADGBQ8N7X0 1667 aa22.08■■□□□ 1.13
LIMS3-206ENST00000631420 RAB3GAP2Q9H2M9 1393 aa22.08■■□□□ 1.13
LIMS3-206ENST00000631420 HECW2Q9P2P5 1572 aa22.07■■□□□ 1.12
LIMS3-206ENST00000631420 KDM6BO15054 1643 aa22.07■■□□□ 1.12
LIMS3-206ENST00000631420 ZMYM4Q5VZL5 1548 aa22.06■■□□□ 1.12
LIMS3-206ENST00000631420 PLXNC1O60486 1568 aa22.05■■□□□ 1.12
LIMS3-206ENST00000631420 ANKRD50Q9ULJ7 1429 aa22.05■■□□□ 1.12
LIMS3-206ENST00000631420 MAGI2Q86UL8 1455 aa22.04■■□□□ 1.12
LIMS3-206ENST00000631420 DHX29Q7Z478 1369 aaKnown RBP22.02■■□□□ 1.12
LIMS3-206ENST00000631420 DUOX2Q9NRD8 1548 aa22.01■■□□□ 1.11
LIMS3-206ENST00000631420 ABCA6Q8N139 1617 aa22.01■■□□□ 1.11
LIMS3-206ENST00000631420 HRCP23327 699 aa22■■□□□ 1.11
LIMS3-206ENST00000631420 GCC2Q8IWJ2 1684 aa22■■□□□ 1.11
LIMS3-206ENST00000631420 A2MP01023 1474 aa21.99■■□□□ 1.11
LIMS3-206ENST00000631420 DIP2CQ9Y2E4 1556 aa21.99■■□□□ 1.11
LIMS3-206ENST00000631420 ATP10AO60312 1499 aa21.97■■□□□ 1.11
LIMS3-206ENST00000631420 KIF3BO15066 747 aa21.96■■□□□ 1.11
LIMS3-206ENST00000631420 ERBINQ96RT1 1412 aa21.96■■□□□ 1.11
LIMS3-206ENST00000631420 TRIM52Q96A61 297 aa21.95■■□□□ 1.11
LIMS3-206ENST00000631420 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.92■■□□□ 1.1
LIMS3-206ENST00000631420 ARHGEF40Q8TER5 1519 aa21.91■■□□□ 1.1
LIMS3-206ENST00000631420 GGT6Q6P531 493 aa21.88■■□□□ 1.09
LIMS3-206ENST00000631420 NUP155O75694 1391 aa21.87■■□□□ 1.09
LIMS3-206ENST00000631420 REREQ9P2R6 1566 aa21.85■■□□□ 1.09
LIMS3-206ENST00000631420 DHX57Q6P158 1386 aaKnown RBP21.84■■□□□ 1.09
LIMS3-206ENST00000631420 MPHOSPH9Q99550 1183 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms