RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 NUDCQ9Y266 331 aa19.31■□□□□ 0.68
PDLIM2-220ENST00000622226 SIN3AQ96ST3 1273 aa19.31■□□□□ 0.68
PDLIM2-220ENST00000622226 CHMP4BQ9H444 224 aaKnown RBP19.3■□□□□ 0.68
PDLIM2-220ENST00000622226 SAFB2Q14151 953 aaKnown RBP eCLIP19.3■□□□□ 0.68
PDLIM2-220ENST00000622226 MS4A1P11836 297 aa19.29■□□□□ 0.68
PDLIM2-220ENST00000622226 CREBRFQ8IUR6 639 aa19.29■□□□□ 0.68
PDLIM2-220ENST00000622226 PLEKHD1A6NEE1 506 aa19.28■□□□□ 0.68
PDLIM2-220ENST00000622226 ZNF771Q7L3S4 317 aaPredicted RBP19.28■□□□□ 0.68
PDLIM2-220ENST00000622226 CALRP27797 417 aaKnown RBP19.27■□□□□ 0.68
PDLIM2-220ENST00000622226 MFAP1P55081 439 aaKnown RBP19.27■□□□□ 0.68
PDLIM2-220ENST00000622226 HSP90B1P14625 803 aaKnown RBP19.27■□□□□ 0.68
PDLIM2-220ENST00000622226 RSPH6AQ9H0K4 717 aa19.27■□□□□ 0.68
PDLIM2-220ENST00000622226 PHF23Q9BUL5 403 aaPredicted RBP19.27■□□□□ 0.67
PDLIM2-220ENST00000622226 SETQ01105 290 aaPredicted RBP19.27■□□□□ 0.67
PDLIM2-220ENST00000622226 NOL8Q76FK4 1167 aaKnown RBP19.26■□□□□ 0.67
PDLIM2-220ENST00000622226 SYAP1Q96A49 352 aaPredicted RBP19.26■□□□□ 0.67
PDLIM2-220ENST00000622226 FOXD4L5Q5VV16 416 aaPredicted RBP19.26■□□□□ 0.67
PDLIM2-220ENST00000622226 FOXD4L4Q8WXT5 416 aaPredicted RBP19.26■□□□□ 0.67
PDLIM2-220ENST00000622226 IPO9Q96P70 1041 aaKnown RBP19.26■□□□□ 0.67
PDLIM2-220ENST00000622226 CDCA8Q53HL2 280 aa19.25■□□□□ 0.67
PDLIM2-220ENST00000622226 POGKQ9P215 609 aa19.25■□□□□ 0.67
PDLIM2-220ENST00000622226 CALD1Q05682 793 aaKnown RBP19.24■□□□□ 0.67
PDLIM2-220ENST00000622226 KIAA1211Q6ZU35 1233 aa19.23■□□□□ 0.67
PDLIM2-220ENST00000622226 ZNF330Q9Y3S2 320 aaPredicted RBP19.22■□□□□ 0.67
PDLIM2-220ENST00000622226 TPM4P67936 248 aa19.21■□□□□ 0.67
PDLIM2-220ENST00000622226 CCAR2Q8N163 923 aaKnown RBP19.21■□□□□ 0.67
PDLIM2-220ENST00000622226 PAK3O75914 559 aaPredicted RBP19.21■□□□□ 0.67
PDLIM2-220ENST00000622226 FBXO3Q9UK99 471 aa19.19■□□□□ 0.66
PDLIM2-220ENST00000622226 SLC4A3P48751 1232 aa19.17■□□□□ 0.66
PDLIM2-220ENST00000622226 TCERG1O14776 1098 aaKnown RBP19.16■□□□□ 0.66
PDLIM2-220ENST00000622226 FAM13BQ9NYF5 915 aa19.16■□□□□ 0.66
PDLIM2-220ENST00000622226 ITPRIPQ8IWB1 547 aa19.14■□□□□ 0.65
PDLIM2-220ENST00000622226 HTATSF1O43719 755 aaKnown RBP19.14■□□□□ 0.65
PDLIM2-220ENST00000622226 STK26Q9P289 416 aa19.13■□□□□ 0.65
PDLIM2-220ENST00000622226 FOXD4L6Q3SYB3 417 aaPredicted RBP19.13■□□□□ 0.65
PDLIM2-220ENST00000622226 FOXD4L3Q6VB84 417 aaPredicted RBP19.13■□□□□ 0.65
PDLIM2-220ENST00000622226 ZNF592Q92610 1267 aa19.13■□□□□ 0.65
PDLIM2-220ENST00000622226 GGT6Q6P531 493 aa19.12■□□□□ 0.65
PDLIM2-220ENST00000622226 TPM3P06753 285 aa19.12■□□□□ 0.65
PDLIM2-220ENST00000622226 RCAN3Q9UKA8 241 aa19.12■□□□□ 0.65
PDLIM2-220ENST00000622226 KLHL34Q8N239 644 aa19.1■□□□□ 0.65
PDLIM2-220ENST00000622226 CFAP44Q96MT7 982 aa19.09■□□□□ 0.65
PDLIM2-220ENST00000622226 CLIP1P30622 1438 aa19.09■□□□□ 0.65
PDLIM2-220ENST00000622226 TAF7LQ5H9L4 462 aa19.09■□□□□ 0.65
PDLIM2-220ENST00000622226 EIF4G1Q04637 1599 aaKnown RBP19.09■□□□□ 0.65
PDLIM2-220ENST00000622226 PES1O00541 588 aaKnown RBP19.08■□□□□ 0.65
PDLIM2-220ENST00000622226 BCL11BQ9C0K0 894 aaPredicted RBP19.08■□□□□ 0.65
PDLIM2-220ENST00000622226 RASSF8Q8NHQ8 419 aa19.08■□□□□ 0.64
PDLIM2-220ENST00000622226 TRIM6-TRIM34B2RNG4 842 aa19.08■□□□□ 0.64
PDLIM2-220ENST00000622226 GSE1Q14687 1217 aa19.08■□□□□ 0.64
PDLIM2-220ENST00000622226 RWDD1Q9H446 243 aaPredicted RBP19.07■□□□□ 0.64
PDLIM2-220ENST00000622226 CSB-PGBD3P0DP91 1061 aa19.07■□□□□ 0.64
PDLIM2-220ENST00000622226 NUTM2DQ5VT03 806 aaPredicted RBP19.06■□□□□ 0.64
PDLIM2-220ENST00000622226 CFDP1Q9UEE9 299 aaPredicted RBP19.06■□□□□ 0.64
PDLIM2-220ENST00000622226 WWC1Q8IX03 1113 aa19.04■□□□□ 0.64
PDLIM2-220ENST00000622226 CEP89Q96ST8 783 aa19.03■□□□□ 0.64
PDLIM2-220ENST00000622226 DDX49Q9Y6V7 483 aaKnown RBP19.03■□□□□ 0.64
PDLIM2-220ENST00000622226 USP35Q9P2H5 1018 aa19.03■□□□□ 0.64
PDLIM2-220ENST00000622226 MSH5O43196 834 aa19.02■□□□□ 0.64
PDLIM2-220ENST00000622226 PHF14O94880 888 aa19.02■□□□□ 0.64
PDLIM2-220ENST00000622226 MEX3CQ5U5Q3 659 aaKnown RBP19.02■□□□□ 0.64
PDLIM2-220ENST00000622226 MORC1Q86VD1 984 aa19.02■□□□□ 0.63
PDLIM2-220ENST00000622226 NUTM2FA1L443 756 aa19.02■□□□□ 0.63
PDLIM2-220ENST00000622226 CLUAP1Q96AJ1 413 aa19.01■□□□□ 0.63
PDLIM2-220ENST00000622226 CCER2I3L3R5 266 aa19.01■□□□□ 0.63
PDLIM2-220ENST00000622226 CSPP1Q1MSJ5 1256 aa19.01■□□□□ 0.63
PDLIM2-220ENST00000622226 IPO8O15397 1037 aaKnown RBP19■□□□□ 0.63
PDLIM2-220ENST00000622226 TMF1P82094 1093 aa18.99■□□□□ 0.63
PDLIM2-220ENST00000622226 MYO15BQ96JP2 1530 aa18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 DDX11L8A8MPP1 907 aa18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 GPS2Q13227 327 aa18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 RTF1Q92541 710 aaKnown RBP18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 SF3A1Q15459 793 aaKnown RBP18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 APPP05067 770 aa18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 DCAF11Q8TEB1 546 aa18.98■□□□□ 0.63
PDLIM2-220ENST00000622226 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
PDLIM2-220ENST00000622226 CYB5RLQ6IPT4 315 aa18.96■□□□□ 0.63
PDLIM2-220ENST00000622226 CCDC34Q96HJ3 373 aa18.96■□□□□ 0.63
PDLIM2-220ENST00000622226 PMFBP1Q8TBY8 1022 aa18.96■□□□□ 0.63
PDLIM2-220ENST00000622226 GOLGA6L19H0YKK7 550 aa18.96■□□□□ 0.63
PDLIM2-220ENST00000622226 CCDC180Q9P1Z9 1646 aa18.95■□□□□ 0.62
PDLIM2-220ENST00000622226 TPD52L1Q16890 204 aaPredicted RBP18.95■□□□□ 0.62
PDLIM2-220ENST00000622226 SRPK2P78362 688 aaKnown RBP18.95■□□□□ 0.62
PDLIM2-220ENST00000622226 HSPA5P11021 654 aaKnown RBP18.94■□□□□ 0.62
PDLIM2-220ENST00000622226 TEX35Q5T0J7 233 aa18.94■□□□□ 0.62
PDLIM2-220ENST00000622226 PKNOX2Q96KN3 472 aa18.94■□□□□ 0.62
PDLIM2-220ENST00000622226 CHMP3Q9Y3E7 222 aa18.93■□□□□ 0.62
PDLIM2-220ENST00000622226 BECN2A8MW95 431 aa18.93■□□□□ 0.62
PDLIM2-220ENST00000622226 KIF16BQ96L93 1317 aa18.92■□□□□ 0.62
PDLIM2-220ENST00000622226 GORABQ5T7V8 394 aa18.92■□□□□ 0.62
PDLIM2-220ENST00000622226 ST18O60284 1047 aa18.92■□□□□ 0.62
PDLIM2-220ENST00000622226 RRP12Q5JTH9 1297 aaKnown RBP18.91■□□□□ 0.62
PDLIM2-220ENST00000622226 SMC4Q9NTJ3 1288 aa18.91■□□□□ 0.62
PDLIM2-220ENST00000622226 U2AF1L5P0DN76 240 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-220ENST00000622226 U2AF1Q01081 240 aaKnown RBP eCLIP18.9■□□□□ 0.62
PDLIM2-220ENST00000622226 TSR1Q2NL82 804 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-220ENST00000622226 CEP162Q5TB80 1403 aa18.9■□□□□ 0.62
PDLIM2-220ENST00000622226 SLC4A10Q6U841 1118 aa18.89■□□□□ 0.62
PDLIM2-220ENST00000622226 TOMM22Q9NS69 142 aa18.89■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms