RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 HFM1A2PYH4 1435 aa25.72■■□□□ 1.71
CNOT3-209ENST00000617930 CDC42BPBQ9Y5S2 1711 aa25.72■■□□□ 1.71
CNOT3-209ENST00000617930 ZNF316A6NFI3 1004 aaPredicted RBP25.71■■□□□ 1.71
CNOT3-209ENST00000617930 CFDP1Q9UEE9 299 aaPredicted RBP25.7■■□□□ 1.7
CNOT3-209ENST00000617930 NAIPQ13075 1403 aa25.69■■□□□ 1.7
CNOT3-209ENST00000617930 PREX2Q70Z35 1606 aa25.68■■□□□ 1.7
CNOT3-209ENST00000617930 KCNH8Q96L42 1107 aa25.68■■□□□ 1.7
CNOT3-209ENST00000617930 DNMT1P26358 1616 aaKnown RBP25.67■■□□□ 1.7
CNOT3-209ENST00000617930 ABCC5O15440 1437 aa25.66■■□□□ 1.7
CNOT3-209ENST00000617930 DAPK1P53355 1430 aa25.65■■□□□ 1.7
CNOT3-209ENST00000617930 WDR7Q9Y4E6 1490 aa25.65■■□□□ 1.7
CNOT3-209ENST00000617930 CHIC2Q9UKJ5 165 aa25.64■■□□□ 1.69
CNOT3-209ENST00000617930 ZNF777Q9ULD5 760 aaPredicted RBP25.64■■□□□ 1.69
CNOT3-209ENST00000617930 DIEXFQ68CQ4 756 aaKnown RBP25.63■■□□□ 1.69
CNOT3-209ENST00000617930 SAMD9LQ8IVG5 1584 aa25.62■■□□□ 1.69
CNOT3-209ENST00000617930 ASXL2Q76L83 1435 aa25.62■■□□□ 1.69
CNOT3-209ENST00000617930 SIN3AQ96ST3 1273 aa25.61■■□□□ 1.69
CNOT3-209ENST00000617930 RRP7BPQ9NSQ0 103 aa25.6■■□□□ 1.69
CNOT3-209ENST00000617930 MYO5CQ9NQX4 1742 aa25.6■■□□□ 1.69
CNOT3-209ENST00000617930 KDM6BO15054 1643 aa25.57■■□□□ 1.68
CNOT3-209ENST00000617930 CYB5RLQ6IPT4 315 aa25.57■■□□□ 1.68
CNOT3-209ENST00000617930 CROCC2H7BZ55 1655 aa25.56■■□□□ 1.68
CNOT3-209ENST00000617930 MBD5Q9P267 1494 aa25.54■■□□□ 1.68
CNOT3-209ENST00000617930 ARHGAP5Q13017 1502 aa25.54■■□□□ 1.68
CNOT3-209ENST00000617930 GCC2Q8IWJ2 1684 aa25.54■■□□□ 1.68
CNOT3-209ENST00000617930 PLCH2O75038 1416 aa25.53■■□□□ 1.68
CNOT3-209ENST00000617930 AKNAQ7Z591 1439 aa25.52■■□□□ 1.68
CNOT3-209ENST00000617930 ABCA9Q8IUA7 1624 aa25.52■■□□□ 1.68
CNOT3-209ENST00000617930 HNRNPMP52272 730 aaKnown RBP eCLIP25.49■■□□□ 1.67
CNOT3-209ENST00000617930 NEUROD1Q13562 356 aa25.49■■□□□ 1.67
CNOT3-209ENST00000617930 SYCP2Q9BX26 1530 aa25.49■■□□□ 1.67
CNOT3-209ENST00000617930 ARHGEF12Q9NZN5 1544 aa25.49■■□□□ 1.67
CNOT3-209ENST00000617930 SCAF1Q9H7N4 1312 aaKnown RBP25.48■■□□□ 1.67
CNOT3-209ENST00000617930 ARHGEF5Q12774 1597 aa25.47■■□□□ 1.67
CNOT3-209ENST00000617930 ROCK1Q13464 1354 aa25.46■■□□□ 1.67
CNOT3-209ENST00000617930 NPM1P06748 294 aaKnown RBP eCLIP25.45■■□□□ 1.66
CNOT3-209ENST00000617930 DENND4BO75064 1496 aaPredicted RBP25.45■■□□□ 1.66
CNOT3-209ENST00000617930 ADGBQ8N7X0 1667 aa25.45■■□□□ 1.66
CNOT3-209ENST00000617930 ADGRL2O95490 1459 aa25.43■■□□□ 1.66
CNOT3-209ENST00000617930 NCOA1Q15788 1441 aa25.42■■□□□ 1.66
CNOT3-209ENST00000617930 SHANK2Q9UPX8 1470 aa25.41■■□□□ 1.66
CNOT3-209ENST00000617930 ARAP3Q8WWN8 1544 aa25.41■■□□□ 1.66
CNOT3-209ENST00000617930 ABCC1P33527 1531 aa25.4■■□□□ 1.66
CNOT3-209ENST00000617930 C9orf84Q5VXU9 1444 aa25.4■■□□□ 1.66
CNOT3-209ENST00000617930 CCDC141Q6ZP82 1450 aa25.4■■□□□ 1.66
CNOT3-209ENST00000617930 KIAA1107Q9UPP5 1409 aa25.37■■□□□ 1.65
CNOT3-209ENST00000617930 EFCAB2Q5VUJ9 269 aa25.36■■□□□ 1.65
CNOT3-209ENST00000617930 TRAPPC8Q9Y2L5 1435 aa25.35■■□□□ 1.65
CNOT3-209ENST00000617930 FANCAO15360 1455 aa25.34■■□□□ 1.65
CNOT3-209ENST00000617930 TIMELESSQ9UNS1 1208 aa25.33■■□□□ 1.65
CNOT3-209ENST00000617930 PLEKHH2Q8IVE3 1493 aa25.32■■□□□ 1.64
CNOT3-209ENST00000617930 TRIM52Q96A61 297 aa25.32■■□□□ 1.64
CNOT3-209ENST00000617930 ACIN1Q9UKV3 1341 aaKnown RBP25.31■■□□□ 1.64
CNOT3-209ENST00000617930 MAST1Q9Y2H9 1570 aa25.31■■□□□ 1.64
CNOT3-209ENST00000617930 PPP1R15AO75807 674 aaPredicted RBP25.3■■□□□ 1.64
CNOT3-209ENST00000617930 ANKRD30AQ9BXX3 1397 aa25.3■■□□□ 1.64
CNOT3-209ENST00000617930 MPHOSPH9Q99550 1183 aa25.29■■□□□ 1.64
CNOT3-209ENST00000617930 CD109Q6YHK3 1445 aa25.28■■□□□ 1.64
CNOT3-209ENST00000617930 TSPY4P0CV99 314 aa25.27■■□□□ 1.64
CNOT3-209ENST00000617930 TSPY10P0CW01 314 aa25.27■■□□□ 1.64
CNOT3-209ENST00000617930 MIER1Q8N108 512 aa25.25■■□□□ 1.63
CNOT3-209ENST00000617930 CENPBP07199 599 aaPredicted RBP25.25■■□□□ 1.63
CNOT3-209ENST00000617930 FOXD1Q16676 465 aa25.25■■□□□ 1.63
CNOT3-209ENST00000617930 RSPH4AQ5TD94 716 aa25.24■■□□□ 1.63
CNOT3-209ENST00000617930 KIF15Q9NS87 1388 aa25.24■■□□□ 1.63
CNOT3-209ENST00000617930 ANKRD50Q9ULJ7 1429 aa25.23■■□□□ 1.63
CNOT3-209ENST00000617930 MAP3K4Q9Y6R4 1608 aa25.23■■□□□ 1.63
CNOT3-209ENST00000617930 AFAP1Q8N556 730 aa25.23■■□□□ 1.63
CNOT3-209ENST00000617930 ADGRL1O94910 1474 aa25.23■■□□□ 1.63
CNOT3-209ENST00000617930 DIP2BQ9P265 1576 aa25.23■■□□□ 1.63
CNOT3-209ENST00000617930 PLXNC1O60486 1568 aa25.2■■□□□ 1.63
CNOT3-209ENST00000617930 GLI2P10070 1586 aa25.2■■□□□ 1.62
CNOT3-209ENST00000617930 SCAPERQ9BY12 1400 aa25.2■■□□□ 1.62
CNOT3-209ENST00000617930 TONSLQ96HA7 1378 aa25.19■■□□□ 1.62
CNOT3-209ENST00000617930 ZFYVE16Q7Z3T8 1539 aa25.18■■□□□ 1.62
CNOT3-209ENST00000617930 PZPP20742 1482 aa25.18■■□□□ 1.62
CNOT3-209ENST00000617930 INO80Q9ULG1 1556 aaPredicted RBP25.14■■□□□ 1.62
CNOT3-209ENST00000617930 ANKRD30BQ9BXX2 1392 aa25.13■■□□□ 1.61
CNOT3-209ENST00000617930 CFAP74Q9C0B2 1584 aa25.12■■□□□ 1.61
CNOT3-209ENST00000617930 PPRC1Q5VV67 1664 aaKnown RBP25.11■■□□□ 1.61
CNOT3-209ENST00000617930 SLC4A1APQ9BWU0 796 aaKnown RBP25.11■■□□□ 1.61
CNOT3-209ENST00000617930 FAM69CQ0P6D2 419 aa25.1■■□□□ 1.61
CNOT3-209ENST00000617930 PELP1Q8IZL8 1130 aaKnown RBP25.1■■□□□ 1.61
CNOT3-209ENST00000617930 SPAG9O60271 1321 aaKnown RBP25.1■■□□□ 1.61
CNOT3-209ENST00000617930 ATP7AQ04656 1500 aa25.09■■□□□ 1.61
CNOT3-209ENST00000617930 KIF13AQ9H1H9 1805 aa25.09■■□□□ 1.61
CNOT3-209ENST00000617930 RTEL1-TNFRSF6BF6WH68 1400 aa25.09■■□□□ 1.61
CNOT3-209ENST00000617930 NEO1Q92859 1461 aa25.07■■□□□ 1.6
CNOT3-209ENST00000617930 KIDINS220Q9ULH0 1771 aa25.07■■□□□ 1.6
CNOT3-209ENST00000617930 DUOX2Q9NRD8 1548 aa25.07■■□□□ 1.6
CNOT3-209ENST00000617930 HIRIP3Q9BW71 556 aaPredicted RBP25.07■■□□□ 1.6
CNOT3-209ENST00000617930 POGZQ7Z3K3 1410 aa25.07■■□□□ 1.6
CNOT3-209ENST00000617930 KDM5DQ9BY66 1539 aa25.06■■□□□ 1.6
CNOT3-209ENST00000617930 TSPOAP1O95153 1857 aa25.06■■□□□ 1.6
CNOT3-209ENST00000617930 KDM5CP41229 1560 aa25.06■■□□□ 1.6
CNOT3-209ENST00000617930 ZNF518AQ6AHZ1 1483 aa25.04■■□□□ 1.6
CNOT3-209ENST00000617930 UNC13BO14795 1591 aa25.03■■□□□ 1.6
CNOT3-209ENST00000617930 L3MBTL2Q969R5 705 aa25.02■■□□□ 1.6
CNOT3-209ENST00000617930 NUP155O75694 1391 aa25.02■■□□□ 1.6
CNOT3-209ENST00000617930 RPRD2Q5VT52 1461 aaKnown RBP25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms